LOCUS       ASD26818.1              1006 aa    PRT              BCT 22-JUN-2017
DEFINITION  Brevundimonas diminuta 2-oxoglutarate dehydrogenase E1
            component protein.
ACCESSION   CP021995-1553
PROTEIN_ID  ASD26818.1
SOURCE      Brevundimonas diminuta
  ORGANISM  Brevundimonas diminuta
            Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Brevundimonas.
REFERENCE   1  (bases 1 to 3385620)
  AUTHORS   Chang,H., Feng,Y., Li,Z., Xue,J. and Cheng,D.
  TITLE     Biodegradation of gentamicin by bacterial consortia AMQD4 in
            synthetic medium and raw gentamicin sewage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3385620)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2017) IARRP, CAAS, ZhongGuancun, Beijing 100081,
            China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 296.25x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/16/2017 13:13:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,288
            CDS (total)                       :: 3,227
            Genes (coding)                    :: 3,192
            CDS (coding)                      :: 3,192
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 9 of 35
            Pseudo Genes (incomplete)         :: 21 of 35
            Pseudo Genes (internal stop)      :: 8 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Brevundimonas diminuta"
                     /mol_type="genomic DNA"
                     /strain="BZC3"
                     /isolation_source="gentamicin fermentation residue"
                     /db_xref="taxon:293"
                     /country="China: Shandong"
                     /collection_date="2016"
     protein         /locus_tag="CD943_07885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MADDAGRLNQ VFAETSFLYG ANAAFIEDLH EKWASDPGSV SGEWRAFFDQ LKDNADLVKQ
       61 SAAAGSWGRS GASEPTEETA VFDGRWPAPK IDPKAAGKPG PRPAAPAADA SGAVSAADVR
      121 AAAHDSIRAL MLIRAYRVRG HLQANLDPLG IEKPIENPEL TPEFYGFTAA DMDRPIFLDG
      181 VLGLETGSVR QVLEILKRTY CGNIGVQFMH IAEPDEKAWL QQRFEGPDKF EQNAFTKEGK
      241 LAIFKKLAEA EGFERFLHKR FPGTKRFGLD GGEAMVPALE QVIKRGGALG VDEIVFGMAH
      301 RGRLNTLAAV MGKPYKAIFH EFQGGSSVPS DIEGSGDVKY HMGASSDREF DGHKVHLSLT
      361 ANPSHLEIVN PVVLGKSRAK QAFDIREAEV NLGKPDAEWV LDRSKVVPLL IHGDAAFAGQ
      421 GVVAECFALM GLKGYRTGGT LHFVINNQIG FTTSPRNSRS SPYPSDVALM VQAPIFHVNG
      481 DDPEAVVFAA KVATEYRQKF HKDVVVDMFC YRRFGHNEGD DPTFTQPLMY AKIKNQPSTL
      541 EIYAKRLIAE GVTTQAEVDA EIARFEAYLD AEFEAGKTFE AKKADWLDGE WKGLGAETVD
      601 DAAQRGDTAV AADKLKDYGH RLTTIPNSVD VHKTLKRVID GRRDAVSSGE NIDWATAESL
      661 AFASLLDEGY NIRLSGQDSV RGTFSQRHSG VTDQTTEQRY FPLNNLRDGQ AHFEVIDSAL
      721 SEEAVLGFEY GYSLADPNTL TMWEGQFGDF VNGAQVVIDQ FISSGERKWL RMSGLVMLLP
      781 HGYEGQGPEH SSARLERFLQ QCAENNMQVA NCTTPANYFH ILRRQLHRSF RKPLILMTPK
      841 SLLRHKKAVS TLADMAEGSS FHRVLRDDAE LRPSVAGVTL KADKDIRKVV VCSGKVYYDL
      901 LDAREKAGVD DIYILRLEQF YPWPIKSISA ELARFPNADL VWCQEEPKNM GGWTFVDPWI
      961 ELTLEKLDVK AKRARYVGRP ASASTAAGLM SRHLKELETF LAEAMA
//