LOCUS ASD26818.1 1006 aa PRT BCT 22-JUN-2017 DEFINITION Brevundimonas diminuta 2-oxoglutarate dehydrogenase E1 component protein. ACCESSION CP021995-1553 PROTEIN_ID ASD26818.1 SOURCE Brevundimonas diminuta ORGANISM Brevundimonas diminuta Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas. REFERENCE 1 (bases 1 to 3385620) AUTHORS Chang,H., Feng,Y., Li,Z., Xue,J. and Cheng,D. TITLE Biodegradation of gentamicin by bacterial consortia AMQD4 in synthetic medium and raw gentamicin sewage JOURNAL Unpublished REFERENCE 2 (bases 1 to 3385620) AUTHORS Liu,Y. TITLE Direct Submission JOURNAL Submitted (15-JUN-2017) IARRP, CAAS, ZhongGuancun, Beijing 100081, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.04 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 296.25x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 06/16/2017 13:13:51 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,288 CDS (total) :: 3,227 Genes (coding) :: 3,192 CDS (coding) :: 3,192 Genes (RNA) :: 61 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 51 ncRNAs :: 4 Pseudo Genes (total) :: 35 Pseudo Genes (ambiguous residues) :: 0 of 35 Pseudo Genes (frameshifted) :: 9 of 35 Pseudo Genes (incomplete) :: 21 of 35 Pseudo Genes (internal stop) :: 8 of 35 Pseudo Genes (multiple problems) :: 3 of 35 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Brevundimonas diminuta" /mol_type="genomic DNA" /strain="BZC3" /isolation_source="gentamicin fermentation residue" /db_xref="taxon:293" /country="China: Shandong" /collection_date="2016" protein /locus_tag="CD943_07885" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003167949.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MADDAGRLNQ VFAETSFLYG ANAAFIEDLH EKWASDPGSV SGEWRAFFDQ LKDNADLVKQ 61 SAAAGSWGRS GASEPTEETA VFDGRWPAPK IDPKAAGKPG PRPAAPAADA SGAVSAADVR 121 AAAHDSIRAL MLIRAYRVRG HLQANLDPLG IEKPIENPEL TPEFYGFTAA DMDRPIFLDG 181 VLGLETGSVR QVLEILKRTY CGNIGVQFMH IAEPDEKAWL QQRFEGPDKF EQNAFTKEGK 241 LAIFKKLAEA EGFERFLHKR FPGTKRFGLD GGEAMVPALE QVIKRGGALG VDEIVFGMAH 301 RGRLNTLAAV MGKPYKAIFH EFQGGSSVPS DIEGSGDVKY HMGASSDREF DGHKVHLSLT 361 ANPSHLEIVN PVVLGKSRAK QAFDIREAEV NLGKPDAEWV LDRSKVVPLL IHGDAAFAGQ 421 GVVAECFALM GLKGYRTGGT LHFVINNQIG FTTSPRNSRS SPYPSDVALM VQAPIFHVNG 481 DDPEAVVFAA KVATEYRQKF HKDVVVDMFC YRRFGHNEGD DPTFTQPLMY AKIKNQPSTL 541 EIYAKRLIAE GVTTQAEVDA EIARFEAYLD AEFEAGKTFE AKKADWLDGE WKGLGAETVD 601 DAAQRGDTAV AADKLKDYGH RLTTIPNSVD VHKTLKRVID GRRDAVSSGE NIDWATAESL 661 AFASLLDEGY NIRLSGQDSV RGTFSQRHSG VTDQTTEQRY FPLNNLRDGQ AHFEVIDSAL 721 SEEAVLGFEY GYSLADPNTL TMWEGQFGDF VNGAQVVIDQ FISSGERKWL RMSGLVMLLP 781 HGYEGQGPEH SSARLERFLQ QCAENNMQVA NCTTPANYFH ILRRQLHRSF RKPLILMTPK 841 SLLRHKKAVS TLADMAEGSS FHRVLRDDAE LRPSVAGVTL KADKDIRKVV VCSGKVYYDL 901 LDAREKAGVD DIYILRLEQF YPWPIKSISA ELARFPNADL VWCQEEPKNM GGWTFVDPWI 961 ELTLEKLDVK AKRARYVGRP ASASTAAGLM SRHLKELETF LAEAMA //