LOCUS       ASD25659.1               600 aa    PRT              BCT 22-JUN-2017
DEFINITION  Brevundimonas diminuta single-stranded-DNA-specific exonuclease
            RecJ protein.
ACCESSION   CP021995-269
PROTEIN_ID  ASD25659.1
SOURCE      Brevundimonas diminuta
  ORGANISM  Brevundimonas diminuta
            Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Brevundimonas.
REFERENCE   1  (bases 1 to 3385620)
  AUTHORS   Chang,H., Feng,Y., Li,Z., Xue,J. and Cheng,D.
  TITLE     Biodegradation of gentamicin by bacterial consortia AMQD4 in
            synthetic medium and raw gentamicin sewage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3385620)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2017) IARRP, CAAS, ZhongGuancun, Beijing 100081,
            China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 296.25x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/16/2017 13:13:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,288
            CDS (total)                       :: 3,227
            Genes (coding)                    :: 3,192
            CDS (coding)                      :: 3,192
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 9 of 35
            Pseudo Genes (incomplete)         :: 21 of 35
            Pseudo Genes (internal stop)      :: 8 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Brevundimonas diminuta"
                     /mol_type="genomic DNA"
                     /strain="BZC3"
                     /isolation_source="gentamicin fermentation residue"
                     /db_xref="taxon:293"
                     /country="China: Shandong"
                     /collection_date="2016"
     protein         /gene="recJ"
                     /locus_tag="CD943_01395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MADGAVSPAF LDVSRSLSGR AWRLRPAEAG VTRAHIQALG LDEPLARALA SRKVAAEQGA
       61 DFLKPTLKAL FPNPSSFMDM DAAAAAIVDA LQAQASIHVF ADYDVDGASS AALLVRWFRT
      121 LGADLPIYVP DRLTEGYGPS ARAFDTLKAS GADLVITVDC GAAANEAVAH AAAIGLKVVV
      181 IDHHMMREEP PACLAVVNPN RPGCGSGQGN LAAAGVVFVL LAALNREARG RGLFEGKAEP
      241 DIRQWLDLAA MGAICDVTGL TGFNRALTSL GLGVMSHWRN PGLRALLAAA GAEPGPAKTN
      301 HAGFILGPRI NAGGRIGKSD LGARLLSTDD PDEARMLAQE LDALNVARRE VEAEVTEQAV
      361 RRVEATGAHA DDSAAVVVSG EDWHPGVVGI VAGRLRERWR KPVIVIGVDA VNGVGKGSGR
      421 SQPGMNLGRA VQAAWNEGLL IAGGGHAMAA GLTVAADRID ELRAFLNERL SAERVEAVAQ
      481 DWVEVDALID PRAATRDLFE AFEQLAPYGP ANPEPLFALE GVQAREPVAM NGGHVRCRLV
      541 GPDGASVRAI AWRCADLPTG KALLAGQGGL NVVGRLRADD WNGRRGVQFE IEDVADPRMA
//