LOCUS       ARV75353.1              1043 aa    PRT              BCT 02-JUN-2017
DEFINITION  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 bifunctional
            proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase
            protein.
ACCESSION   CP015864-1473
PROTEIN_ID  ARV75353.1
SOURCE      Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
  ORGANISM  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 1850375)
  AUTHORS   Wang,Z. and Vora,G.J.
  TITLE     Complete genome of Vibrio campbellii type strain (ATCC 25920; CAIM
            519T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1850375)
  AUTHORS   Wang,Z. and Vora,G.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2016) Center for Bio/Molecular Science &
            Engineering, Code 6900, Naval Research Laboratory, 4555 Overlook
            Avenue, SW, Washington, DC 20375, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: SMRT Analysis v. 2.3.0 HGAP.2
            Reference-guided Assembly :: CP006606.1
            Genome Coverage           :: 23x
            Sequencing Technology     :: PacBio RS II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/25/2016 17:47:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,754
            CDS (total)                       :: 4,578
            Genes (coding)                    :: 4,479
            CDS (coding)                      :: 4,479
            Genes (RNA)                       :: 176
            rRNAs                             :: 13, 12, 12 (5S, 16S, 23S)
            complete rRNAs                    :: 13, 12, 12 (5S, 16S, 23S)
            tRNAs                             :: 134
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 51 of 99
            Pseudo Genes (incomplete)         :: 31 of 99
            Pseudo Genes (internal stop)      :: 40 of 99
            Pseudo Genes (multiple problems)  :: 20 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC
                     25920"
                     /mol_type="genomic DNA"
                     /strain="ATCC 25920, CAIM 519T"
                     /isolation_source="Ocean"
                     /db_xref="taxon:1224742"
                     /chromosome="2"
                     /country="USA: Hawaii"
     protein         /locus_tag="A8140_22395"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_016785435.1"
                     /note="proline utilization protein A; multifunctional
                     protein that functions in proline catabolism in the first
                     two enzymatic steps resulting in the conversion of proline
                     to glutamate; in Escherichia coli this protein self
                     regulates transcription via a DNA-binding domain at the
                     N-terminus but the proteins from this group do not and in
                     addition appear to have a truncated C-terminal domain;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MFTATNVLTP EFIEQPLDKL WSLISPLYMV DESQWLEQLL PLATPTAEEK SAITTQTTQL
       61 IEAIRADKKS IQMIDALLLE YSLDTHEGIL LMCLAEALMR IPDSATADAL IKDKLSVADW
      121 KSHLKSSDSV FVNASTWGLM LTGKVIDLGE QVTQSPGQAV NRLVNKFSEP VIRKAMYQAM
      181 KIMGHQFVRG RTIEEAQKNG RPMRDKGFTY SFDMLGEAAL TTADASKYFK DYLMAIEAVG
      241 RETYGSDTSP APSVSIKLSA LHPRYEVANE ERVMTELYDT LTQLLKRAIE VDVAITIDAE
      301 EADRLELSLK LFEKLYRSDL LKGWGKFGLV VQAYSKRALP VLVWLNGLAK EQGDLIPLRL
      361 VKGAYWDSEI KWSQQAGYEN YPVYTRKEAT DVAYLACARF LLSEGVRGNI FPQFASHNAH
      421 TVTAIAVMAE HKDYEFQRLH GMGDSLYNHV MDTYGQPVRI YAPVGSHADL LPYLVRRLLE
      481 NGANSSFVHR LVDARCPISE LTHHPVDVLT SFETLHNGQI PMPTGIFPER KNSHGVNVDI
      541 DSEAKPFEAQ VESFLTQNWT AGPIINGEKH AESMIKENSA EIITAPYDRR IEVGQVAFAS
      601 LDHVSAAIEA ADAAFPEWKG TAIEQKAACL DKLADLMEEN LAELVAICHQ EAGKTIHDSI
      661 DEVREAVDFC RYYAKQAQNL QPFELDGFDG VKRISSREGL GVFVCISPWN FPLAIFLGQV
      721 TAALVAGNTV VAKPAEQTSL IAARAIELML EAGFPAGVIQ LLPGRGGEIG HALTSHDAIA
      781 GVAFTGSTAT AQRINVTLAE RSAKPVPFIA ETGGQNAMIV DSTALPEQVV RDVIRSAFAS
      841 AGQRCSALRV LFVQEDVADR IINLIQGAMN ELHVGIPYLH KTDVGPVIDI NAKNKLLAHL
      901 EHMTSTQTKV AQLQLDEACQ HGDFVSPSAF EISGIDVLKE EQFGPILHIV RFKASELPNV
      961 VEQINQTGFG LTMGIHSRNE TTYRWIEKHA RVGNCYINRD QVGAVVGVQP FGGQGLSGTG
     1021 PKAGGPHYLY RFTKQHLVQA EKA
//