LOCUS ARV75353.1 1043 aa PRT BCT 02-JUN-2017 DEFINITION Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase protein. ACCESSION CP015864-1473 PROTEIN_ID ARV75353.1 SOURCE Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 ORGANISM Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 1850375) AUTHORS Wang,Z. and Vora,G.J. TITLE Complete genome of Vibrio campbellii type strain (ATCC 25920; CAIM 519T) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1850375) AUTHORS Wang,Z. and Vora,G.J. TITLE Direct Submission JOURNAL Submitted (25-MAY-2016) Center for Bio/Molecular Science & Engineering, Code 6900, Naval Research Laboratory, 4555 Overlook Avenue, SW, Washington, DC 20375, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SMRT Analysis v. 2.3.0 HGAP.2 Reference-guided Assembly :: CP006606.1 Genome Coverage :: 23x Sequencing Technology :: PacBio RS II ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 17:47:01 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,754 CDS (total) :: 4,578 Genes (coding) :: 4,479 CDS (coding) :: 4,479 Genes (RNA) :: 176 rRNAs :: 13, 12, 12 (5S, 16S, 23S) complete rRNAs :: 13, 12, 12 (5S, 16S, 23S) tRNAs :: 134 ncRNAs :: 5 Pseudo Genes (total) :: 99 Pseudo Genes (ambiguous residues) :: 0 of 99 Pseudo Genes (frameshifted) :: 51 of 99 Pseudo Genes (incomplete) :: 31 of 99 Pseudo Genes (internal stop) :: 40 of 99 Pseudo Genes (multiple problems) :: 20 of 99 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920" /mol_type="genomic DNA" /strain="ATCC 25920, CAIM 519T" /isolation_source="Ocean" /db_xref="taxon:1224742" /chromosome="2" /country="USA: Hawaii" protein /locus_tag="A8140_22395" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_016785435.1" /note="proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MFTATNVLTP EFIEQPLDKL WSLISPLYMV DESQWLEQLL PLATPTAEEK SAITTQTTQL 61 IEAIRADKKS IQMIDALLLE YSLDTHEGIL LMCLAEALMR IPDSATADAL IKDKLSVADW 121 KSHLKSSDSV FVNASTWGLM LTGKVIDLGE QVTQSPGQAV NRLVNKFSEP VIRKAMYQAM 181 KIMGHQFVRG RTIEEAQKNG RPMRDKGFTY SFDMLGEAAL TTADASKYFK DYLMAIEAVG 241 RETYGSDTSP APSVSIKLSA LHPRYEVANE ERVMTELYDT LTQLLKRAIE VDVAITIDAE 301 EADRLELSLK LFEKLYRSDL LKGWGKFGLV VQAYSKRALP VLVWLNGLAK EQGDLIPLRL 361 VKGAYWDSEI KWSQQAGYEN YPVYTRKEAT DVAYLACARF LLSEGVRGNI FPQFASHNAH 421 TVTAIAVMAE HKDYEFQRLH GMGDSLYNHV MDTYGQPVRI YAPVGSHADL LPYLVRRLLE 481 NGANSSFVHR LVDARCPISE LTHHPVDVLT SFETLHNGQI PMPTGIFPER KNSHGVNVDI 541 DSEAKPFEAQ VESFLTQNWT AGPIINGEKH AESMIKENSA EIITAPYDRR IEVGQVAFAS 601 LDHVSAAIEA ADAAFPEWKG TAIEQKAACL DKLADLMEEN LAELVAICHQ EAGKTIHDSI 661 DEVREAVDFC RYYAKQAQNL QPFELDGFDG VKRISSREGL GVFVCISPWN FPLAIFLGQV 721 TAALVAGNTV VAKPAEQTSL IAARAIELML EAGFPAGVIQ LLPGRGGEIG HALTSHDAIA 781 GVAFTGSTAT AQRINVTLAE RSAKPVPFIA ETGGQNAMIV DSTALPEQVV RDVIRSAFAS 841 AGQRCSALRV LFVQEDVADR IINLIQGAMN ELHVGIPYLH KTDVGPVIDI NAKNKLLAHL 901 EHMTSTQTKV AQLQLDEACQ HGDFVSPSAF EISGIDVLKE EQFGPILHIV RFKASELPNV 961 VEQINQTGFG LTMGIHSRNE TTYRWIEKHA RVGNCYINRD QVGAVVGVQP FGGQGLSGTG 1021 PKAGGPHYLY RFTKQHLVQA EKA //