LOCUS       ARV73812.1               711 aa    PRT              BCT 02-JUN-2017
DEFINITION  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 lysine
            decarboxylase LdcC protein.
ACCESSION   CP015863-2748
PROTEIN_ID  ARV73812.1
SOURCE      Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
  ORGANISM  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3253249)
  AUTHORS   Wang,Z. and Vora,G.J.
  TITLE     Complete genome of Vibrio campbellii type strain (ATCC 25920; CAIM
            519T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3253249)
  AUTHORS   Wang,Z. and Vora,G.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2016) Center for Bio/Molecular Science &
            Engineering, Code 6900, Naval Research Laboratory, 4555 Overlook
            Avenue, SW, Washington, DC 20375, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: SMRT Analysis v. 2.3.0 HGAP.2
            Reference-guided Assembly :: CP006605.1
            Genome Coverage           :: 23x
            Sequencing Technology     :: PacBio RS II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/25/2016 17:47:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,754
            CDS (total)                       :: 4,578
            Genes (coding)                    :: 4,479
            CDS (coding)                      :: 4,479
            Genes (RNA)                       :: 176
            rRNAs                             :: 13, 12, 12 (5S, 16S, 23S)
            complete rRNAs                    :: 13, 12, 12 (5S, 16S, 23S)
            tRNAs                             :: 134
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 51 of 99
            Pseudo Genes (incomplete)         :: 31 of 99
            Pseudo Genes (internal stop)      :: 40 of 99
            Pseudo Genes (multiple problems)  :: 20 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC
                     25920"
                     /mol_type="genomic DNA"
                     /strain="ATCC 25920, CAIM 519T"
                     /isolation_source="Ocean"
                     /db_xref="taxon:1224742"
                     /chromosome="1"
                     /country="USA: Hawaii"
     protein         /locus_tag="A8140_14440"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_001019828.1"
                     /note="constitutive; catalyzes the formation of cadaverine
                     from lysine; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MNIFAILNHM GVFFKEEPVR QLHAALEKAG YEVVYPVDDK DLIKMIEMNP RICGVLFDWD
       61 KYSLELCERI SQINEKLPVH AFANEQSTLD ISLTDLRLNV SFFEYALGMA DDIAIKINQA
      121 TEAYKDAIMP PFTKALFKYV EEGKYTFCTP GHMGGTAFQK SPAGSIFYDF YGPNTFKADV
      181 SISMPELGSL LDHSGPHKDA EEYIARTFNA DSSYIVTNGT STSNKIVGMY SAPAGSTVLI
      241 DRNCHKSLTH LMMMSDVTPI YFRPTRNAYG ILGGIPQSEF SRDVIAEKVA KTPGAKAPSY
      301 AVVTNSTYDG LLYNTQFIKE SLDCKHIHFD SAWVPYTNFN PIYEGKCGMS GEAMPGKVFY
      361 ETQSTHKLLA AFSQASMIHV KGDFDKESFN EAFMMHTSTS PQYGIVASTE TAAAMMRGNT
      421 GKKLMQDSID RAIRFRKEIK RLEAESDSWF FDVWQPENID STECWKLDPS DTWHGFKNMD
      481 DNHMYLDPIK VTLLTPGMNK ESELEESGIP ASLVAKFLDE RGIVVEKTGP YNLLFLFSIG
      541 IDKSKAMQLL RGLTEFKRGY DLNLTIKSFL PSLYNEDPSF YEGMRVQELA QAIHNLTKKY
      601 NLPELMYKAF DVLPEMKVTP HAAWQEELRG NVEEIKLEEM VGRVSANMIL PYPPGVPLVL
      661 PGEMVTQESR PVLDFLEMLC EIGAHYPGFE TDIHGLYQQK DGSYTVKVLK N
//