LOCUS       ARV73525.1               439 aa    PRT              BCT 02-JUN-2017
DEFINITION  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 23S
            rRNA (uracil(1939)-C(5))-methyltransferase protein.
ACCESSION   CP015863-2449
PROTEIN_ID  ARV73525.1
SOURCE      Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
  ORGANISM  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
            Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
            Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3253249)
  AUTHORS   Wang,Z. and Vora,G.J.
  TITLE     Complete genome of Vibrio campbellii type strain (ATCC 25920; CAIM
            519T)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3253249)
  AUTHORS   Wang,Z. and Vora,G.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2016) Center for Bio/Molecular Science &
            Engineering, Code 6900, Naval Research Laboratory, 4555 Overlook
            Avenue, SW, Washington, DC 20375, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: SMRT Analysis v. 2.3.0 HGAP.2
            Reference-guided Assembly :: CP006605.1
            Genome Coverage           :: 23x
            Sequencing Technology     :: PacBio RS II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/25/2016 17:47:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,754
            CDS (total)                       :: 4,578
            Genes (coding)                    :: 4,479
            CDS (coding)                      :: 4,479
            Genes (RNA)                       :: 176
            rRNAs                             :: 13, 12, 12 (5S, 16S, 23S)
            complete rRNAs                    :: 13, 12, 12 (5S, 16S, 23S)
            tRNAs                             :: 134
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 51 of 99
            Pseudo Genes (incomplete)         :: 31 of 99
            Pseudo Genes (internal stop)      :: 40 of 99
            Pseudo Genes (multiple problems)  :: 20 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC
                     25920"
                     /mol_type="genomic DNA"
                     /strain="ATCC 25920, CAIM 519T"
                     /isolation_source="Ocean"
                     /db_xref="taxon:1224742"
                     /chromosome="1"
                     /country="USA: Hawaii"
     protein         /gene="rumA"
                     /locus_tag="A8140_12680"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_017189117.1"
                     /note="in Escherichia coli this enzyme catalyzes the
                     SAM-dependent methylation of U1939 in the 23S ribomal RNA;
                     binds an iron-sulfur cluster [4Fe-4S]; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MARIFQPKKK TQLNTRHQAV QVERLDHHGA GIAYLKKKPL FIDGALPGEE VVTQLVEEKS
       61 KFARGKLIKI LKPSEARVEP FCPHYHECGG CDLQHLNYDQ QLTHKQQTLR QLMRKFAGSD
      121 IELDAPVLGE SLGYRRRARV SLFVDKKTRQ LHFGFRKKQS KQIAQVTDCP VLAPELNVLL
      181 PEIYSTLKAF KKPEQLGHVE LVLGDNGPCI TLRHLNKLTE KETNTLVKLA KRHQASLCLM
      241 PETDQLDLVE GEVPFYQEPG VTVPFTPNNF IQVNQAVNQK MVAQAVDWLD PKSDERVLDL
      301 FCGLGNFSLP IAKRAKHVVG VEGVAEMVEK AANNASLNQI NNARFYHANL EQDFEGQVWA
      361 AEQFDKVLLD PARAGASGII DQVSVLGARR IVYVSCNPAT LARDSQSLLE QGYQLTKLGM
      421 LDMFPHTSHL ESMALFEKS
//