LOCUS AQA20420.1 576 aa PRT BCT 03-FEB-2017 DEFINITION Halioglobus japonicus amino acid hydroxylase protein. ACCESSION CP019453-9 PROTEIN_ID AQA20420.1 SOURCE Halioglobus japonicus ORGANISM Halioglobus japonicus Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Halieaceae; Halioglobus. REFERENCE 1 (bases 1 to 11431) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Trade-off between light-utilization and light-protection in marine flavobacteria JOURNAL Unpublished REFERENCE 2 (bases 1 to 11431) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Direct Submission JOURNAL Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8564, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Sprai v. 0.9.5.1.3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.22x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/25/2017 14:24:47 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,896 CDS (total) :: 3,844 Genes (coding) :: 3,581 CDS (coding) :: 3,581 Genes (RNA) :: 52 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 263 Pseudo Genes (ambiguous residues) :: 0 of 263 Pseudo Genes (frameshifted) :: 228 of 263 Pseudo Genes (incomplete) :: 31 of 263 Pseudo Genes (internal stop) :: 12 of 263 Pseudo Genes (multiple problems) :: 8 of 263 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Halioglobus japonicus" /mol_type="genomic DNA" /strain="NBRC 107739" /isolation_source="Western North Pacific Station S1" /culture_collection="NBRC:107739" /type_material="type strain of Halioglobus japonicus" /db_xref="taxon:930805" /plasmid="unnamed3" /country="Pacific Ocean: Western North Pacific Station S1" /collection_date="09-Feb-2010" protein /locus_tag="BST95_19460" /inference="COORDINATES: protein motif:HMM:PRK14056.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MFHNEQPTRP PAPFVKVQDY SDYTPRDQAV WRFIMKHLTG QLEKTAHPVY LDGLARTGIA 61 LDHIPSIEEM NACLTQLGWR AVVVDGFIPP AIFMEFQALK VLVIALDMRS VYNVFYTPAP 121 DIVHESAGHA PFIVDIDYAE FLQRFGAVGM KAIATREDLE QYEAIRKLSI LKECPDSSSD 181 EIASGEAELE RLAQSEQPPS EAALLTRLHW WTVEYGLVGD PDDYHIFGAG LLSSLGESRH 241 CLNDEAVRKV PLTVDAVNTA YDITREQPQL FVTKSCKHLS QVLEEFAASM CFKRGGAESL 301 RTAIDAASMC TATYDSGMQV SGVFCEVLCD AVGNATYLRT SGPTQLAYRD QEIIGHGVAW 361 HSEGFGSPIG HIKDFSRCLS EYTIDELAAH NIAIGKPVRL EYLSGITVEG TLDKVFRQDH 421 RNLILTFSDC SVQDLHGRIL FDPAWGTYDL AVGSSIPSVY GGVADRTALQ LYKPTPHTET 481 IRVEHDVQLM ACYALVENVR RAEKNSSDPD IQDALTAALE AYPEEWLLRA EMLTVASKAL 541 HERLVDELRS LGETHDALQE LTALAINPEY AFAKSA //