LOCUS       AQA20241.1               846 aa    PRT              BCT 03-FEB-2017
DEFINITION  Halioglobus japonicus DNA mismatch repair protein MutS protein.
ACCESSION   CP019450-1965
PROTEIN_ID  AQA20241.1
SOURCE      Halioglobus japonicus
  ORGANISM  Halioglobus japonicus
            Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales;
            Halieaceae; Halioglobus.
REFERENCE   1  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Trade-off between light-utilization and light-protection in marine
            flavobacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean
            Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha,
            Kashiwa-shi, Chiba 277-8564, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Sprai v. 0.9.5.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.22x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/25/2017 14:24:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,896
            CDS (total)                       :: 3,844
            Genes (coding)                    :: 3,581
            CDS (coding)                      :: 3,581
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 263
            Pseudo Genes (ambiguous residues) :: 0 of 263
            Pseudo Genes (frameshifted)       :: 228 of 263
            Pseudo Genes (incomplete)         :: 31 of 263
            Pseudo Genes (internal stop)      :: 12 of 263
            Pseudo Genes (multiple problems)  :: 8 of 263
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Halioglobus japonicus"
                     /mol_type="genomic DNA"
                     /strain="NBRC 107739"
                     /isolation_source="Western North Pacific Station S1"
                     /culture_collection="NBRC:107739"
                     /type_material="type strain of Halioglobus japonicus"
                     /db_xref="taxon:930805"
                     /country="Pacific Ocean: Western North Pacific Station S1"
                     /collection_date="09-Feb-2010"
     protein         /locus_tag="BST95_09910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007235443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MMVQYLAIKA EHPRDMVFYR MGDFYELFYD DAKKAAEILD ITLTARGKSA GEPIPMAGVP
       61 FHAAENYLAR LVKAGVSVAI AEQIGDPATS KGPVERKVVR VVTPGTVSDE ALLDERVDNL
      121 LLALNHSGED YGLAYLDLST GRFRVLEVSG EEALAGELQR LNPAETLYCD TIGHTLVSER
      181 SGARAQPAWE FDTESARRAL NTQFQTHDLQ GFGCDGLDLA IGAAGCLLQY VKDTQRSNLP
      241 HLRSMSHESR AESVILDAAT RRNLEIDINM SGGETNTLFS VLDKGVTAMG SRLLRRWLHR
      301 PLTDITTLEA RQNAIAALCA NYHYETVREQ LKPIGDMERI LARVALRSAR PRDLTRLLSS
      361 LAALPPLRSE LGHCDAPLLA QLSLQAGDYP ELVELLDRAI IENPPVVIRD GGVIADGYDA
      421 ELDELREIST GAGNYLLEIE QRERETTGIS TLKVGYNRVH GYYIEISRSQ SDQAPAEYVR
      481 RQTLKNAERF ITPELKEFED KALSSKSRAL AREKALYDAL IDRLNEQLAQ LQDTAAAVSE
      541 IDVLACLAER AENLSLCRPQ FVEDQVFEVS QGRHLVVEQV LEEPFIANDT LLDSKRRMLL
      601 ITGPNMGGKS TYMRQNAVIA LLAHIGSFVP ATTTRLAPMD RIFTRIGSSD DLASGRSTFM
      661 VEMTETANIL HNATPRSLVL MDEVGRGTST FDGLSLAWAA AVELAQRVQA FTLFATHYFE
      721 LTTLPDTCPT MANVHLDATE HQDHVVFLHH IQEGPANRSF GLQVAKLAGI PGPVLQAASD
      781 KLQELEQGAP EAPVARTVSP VPPSPQVDLF ASAGPHPVVE SLQDLDIDDL SPRAALELLY
      841 QLKKKL
//