LOCUS AQA20241.1 846 aa PRT BCT 03-FEB-2017 DEFINITION Halioglobus japonicus DNA mismatch repair protein MutS protein. ACCESSION CP019450-1965 PROTEIN_ID AQA20241.1 SOURCE Halioglobus japonicus ORGANISM Halioglobus japonicus Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Halieaceae; Halioglobus. REFERENCE 1 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Trade-off between light-utilization and light-protection in marine flavobacteria JOURNAL Unpublished REFERENCE 2 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Direct Submission JOURNAL Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8564, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Sprai v. 0.9.5.1.3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.22x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/25/2017 14:24:47 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,896 CDS (total) :: 3,844 Genes (coding) :: 3,581 CDS (coding) :: 3,581 Genes (RNA) :: 52 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 263 Pseudo Genes (ambiguous residues) :: 0 of 263 Pseudo Genes (frameshifted) :: 228 of 263 Pseudo Genes (incomplete) :: 31 of 263 Pseudo Genes (internal stop) :: 12 of 263 Pseudo Genes (multiple problems) :: 8 of 263 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Halioglobus japonicus" /mol_type="genomic DNA" /strain="NBRC 107739" /isolation_source="Western North Pacific Station S1" /culture_collection="NBRC:107739" /type_material="type strain of Halioglobus japonicus" /db_xref="taxon:930805" /country="Pacific Ocean: Western North Pacific Station S1" /collection_date="09-Feb-2010" protein /locus_tag="BST95_09910" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007235443.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MMVQYLAIKA EHPRDMVFYR MGDFYELFYD DAKKAAEILD ITLTARGKSA GEPIPMAGVP 61 FHAAENYLAR LVKAGVSVAI AEQIGDPATS KGPVERKVVR VVTPGTVSDE ALLDERVDNL 121 LLALNHSGED YGLAYLDLST GRFRVLEVSG EEALAGELQR LNPAETLYCD TIGHTLVSER 181 SGARAQPAWE FDTESARRAL NTQFQTHDLQ GFGCDGLDLA IGAAGCLLQY VKDTQRSNLP 241 HLRSMSHESR AESVILDAAT RRNLEIDINM SGGETNTLFS VLDKGVTAMG SRLLRRWLHR 301 PLTDITTLEA RQNAIAALCA NYHYETVREQ LKPIGDMERI LARVALRSAR PRDLTRLLSS 361 LAALPPLRSE LGHCDAPLLA QLSLQAGDYP ELVELLDRAI IENPPVVIRD GGVIADGYDA 421 ELDELREIST GAGNYLLEIE QRERETTGIS TLKVGYNRVH GYYIEISRSQ SDQAPAEYVR 481 RQTLKNAERF ITPELKEFED KALSSKSRAL AREKALYDAL IDRLNEQLAQ LQDTAAAVSE 541 IDVLACLAER AENLSLCRPQ FVEDQVFEVS QGRHLVVEQV LEEPFIANDT LLDSKRRMLL 601 ITGPNMGGKS TYMRQNAVIA LLAHIGSFVP ATTTRLAPMD RIFTRIGSSD DLASGRSTFM 661 VEMTETANIL HNATPRSLVL MDEVGRGTST FDGLSLAWAA AVELAQRVQA FTLFATHYFE 721 LTTLPDTCPT MANVHLDATE HQDHVVFLHH IQEGPANRSF GLQVAKLAGI PGPVLQAASD 781 KLQELEQGAP EAPVARTVSP VPPSPQVDLF ASAGPHPVVE SLQDLDIDDL SPRAALELLY 841 QLKKKL //