LOCUS AQA19630.1 799 aa PRT BCT 03-FEB-2017 DEFINITION Halioglobus japonicus hypothetical protein protein. ACCESSION CP019450-3304 PROTEIN_ID AQA19630.1 SOURCE Halioglobus japonicus ORGANISM Halioglobus japonicus Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Halieaceae; Halioglobus. REFERENCE 1 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Trade-off between light-utilization and light-protection in marine flavobacteria JOURNAL Unpublished REFERENCE 2 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Direct Submission JOURNAL Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8564, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Sprai v. 0.9.5.1.3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.22x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/25/2017 14:24:47 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,896 CDS (total) :: 3,844 Genes (coding) :: 3,581 CDS (coding) :: 3,581 Genes (RNA) :: 52 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 263 Pseudo Genes (ambiguous residues) :: 0 of 263 Pseudo Genes (frameshifted) :: 228 of 263 Pseudo Genes (incomplete) :: 31 of 263 Pseudo Genes (internal stop) :: 12 of 263 Pseudo Genes (multiple problems) :: 8 of 263 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Halioglobus japonicus" /mol_type="genomic DNA" /strain="NBRC 107739" /isolation_source="Western North Pacific Station S1" /culture_collection="NBRC:107739" /type_material="type strain of Halioglobus japonicus" /db_xref="taxon:930805" /country="Pacific Ocean: Western North Pacific Station S1" /collection_date="09-Feb-2010" protein /locus_tag="BST95_16705" /inference="COORDINATES: protein motif:HMM:PF07715.13" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MPVFGASLLL PVSGPAALAQ ESAPNSLVLE EILVTASRRV ERLQEVGMSV SAFGSDFLQS 61 TGVNQLTDLE QYTPNLKITP STDSNGTSYR IRGIGSVGTN SGIDPSVGMF IDGVYQGRAG 121 MSISDLIDVE RIEVLRGPQG TLYGKNTAAG AISIITKQPT NEFEYLAEAG YDSEERMELR 181 GMVNVPLGDS GHAMRLSAYG IDGDHMYRNT YTGKGINDAN KYGGRARLLF DFEGDTTTDG 241 FGQFILSLDY SKEDTDCCAL ATITYEGLST LNSPITSTPS AQWQEMLGNN ALGQPILRFN 301 DFETAEGFSP PEADPFGDDY WFNADLGNEV DVGGAALEWN RDLESGSTIT FINAWRFYES 361 LSMFDGDFTA YDASRTTTDI DLDQYSSELR ITSEGGETID YQAGLYAYRS TLDSQGDFEQ 421 REDLLEKIVL FGDITMADFS PGGSTNIDTN EYITTSYAAF GQAVWNITEA FSTTLGLRYT 481 YEKKERVGTQ ITTPSVPFDT PPIAGPDIAY DDDRSDTALS PSLNFRYFFN PDVMGYAMVS 541 RGFKSGGYDQ RRQALGETGE FDEEISTSYE LGWKTSWGNR RVQFNGALFF VDYEDFQAQS 601 FDGASLKVTN AGDMESYGAE LEFTYLPTTN VIFGSALGYN KAEYKSFDNG QCTVQQSFEQ 661 YYIIEGAQGG TPGTASVCLQ DLAGQPIDNA PEWTISSYIQ YDHEMGSDLV GTARLEHSYT 721 DSYFLDQDLD PNLENDSVNL INLRLTLSNQ ARTWEAILWG RNLLDEEYYS WGIDAPTVGG 781 YAGVVAPGST YGVTLRMMN //