LOCUS AQA19032.1 851 aa PRT BCT 03-FEB-2017
DEFINITION Halioglobus japonicus ATP-dependent helicase HrpB protein.
ACCESSION CP019450-2581
PROTEIN_ID AQA19032.1
SOURCE Halioglobus japonicus
ORGANISM Halioglobus japonicus
Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales;
Halieaceae; Halioglobus.
REFERENCE 1 (bases 1 to 4085301)
AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K.
TITLE Trade-off between light-utilization and light-protection in marine
flavobacteria
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4085301)
AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K.
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean
Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha,
Kashiwa-shi, Chiba 277-8564, Japan
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: Sprai v. 0.9.5.1.3
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 25.22x
Sequencing Technology :: PacBio
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 01/25/2017 14:24:47
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,896
CDS (total) :: 3,844
Genes (coding) :: 3,581
CDS (coding) :: 3,581
Genes (RNA) :: 52
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 42
ncRNAs :: 4
Pseudo Genes (total) :: 263
Pseudo Genes (ambiguous residues) :: 0 of 263
Pseudo Genes (frameshifted) :: 228 of 263
Pseudo Genes (incomplete) :: 31 of 263
Pseudo Genes (internal stop) :: 12 of 263
Pseudo Genes (multiple problems) :: 8 of 263
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Halioglobus japonicus"
/mol_type="genomic DNA"
/strain="NBRC 107739"
/isolation_source="Western North Pacific Station S1"
/culture_collection="NBRC:107739"
/type_material="type strain of Halioglobus japonicus"
/db_xref="taxon:930805"
/country="Pacific Ocean: Western North Pacific Station S1"
/collection_date="09-Feb-2010"
protein /locus_tag="BST95_13070"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_007227831.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MNIPAIADLP IAKVLSELVL TLAGHHELVL QAPPGAGKTT AVPLALLDER WLKGRKILML
61 EPRRMAARSA AARMAELLGE EVGETVGYRI RLDACVSEAT RIEVITEGIL TRRLQSDPGL
121 EDVGLVIFDE FHERSLDSDL CLALCLQGRE LFREEDPLKL LVMSATLDGD AVATLLDGAP
181 VVTSKGRQYP VTTLYRRTLK LQEAIAPPVT DVVLDALANS QGSALVFLPG QREIRAVARD
241 LGARLSAYPE VDVCPLYGSL KLEQQQRAIA PALEGRRKVV LATNVAETSL TIEGVTIVID
301 SGLAREPMFD PVTGVTRLVT RRVSQASAEQ RRGRAGRLAP GACYRLWSEE QQGRLVSHSS
361 PEILQADLAP LALQLLAWGV SDPQELCWLN TPPQPAWQQA ISVLEQCGAV FTHPQSGLQL
421 TPHGVRLAQV PLHPRLAHML LVGCDIKARE TACLLAAVLS ERNPLGNESA DIADAIALLL
481 GEGKCPERLQ GWFRRVWQLA RRYARIATEV HQPRGAGFDV GADDVCGILL ASAYPDRIAK
541 QRSEGQYQLA NGRSASVDRG QAIAGEAWLA VADIGGERGS STDRIYSATR LNPVCFDGIL
601 AELVRREDLV EWDQREERFS AQRRRMVGAI QLKSSPLREV SDEARGEALL GVVRRRGLDI
661 LPWDSDTLQW RARVQLLHDS VAEEGGDNPW PDLRDAALLA TLEQWLGPWL EPVRKLDDFA
721 RLDLQAILTG MLAWPLPLDL ERLVPERISV PSGSSIRVDY TQHPPVLAVK LQEMFGCEST
781 PTVAHGKVRL MVHLLSPAQR PLQVTQDLAG FWRGSYQDVK KEMKGRYPKH PWPDDPLQAP
841 ATRHTKRRSD A
//