LOCUS AQA18998.1 547 aa PRT BCT 03-FEB-2017 DEFINITION Halioglobus japonicus hypothetical protein protein. ACCESSION CP019450-2537 PROTEIN_ID AQA18998.1 SOURCE Halioglobus japonicus ORGANISM Halioglobus japonicus Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Halieaceae; Halioglobus. REFERENCE 1 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Trade-off between light-utilization and light-protection in marine flavobacteria JOURNAL Unpublished REFERENCE 2 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Direct Submission JOURNAL Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8564, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Sprai v. 0.9.5.1.3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.22x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/25/2017 14:24:47 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,896 CDS (total) :: 3,844 Genes (coding) :: 3,581 CDS (coding) :: 3,581 Genes (RNA) :: 52 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 263 Pseudo Genes (ambiguous residues) :: 0 of 263 Pseudo Genes (frameshifted) :: 228 of 263 Pseudo Genes (incomplete) :: 31 of 263 Pseudo Genes (internal stop) :: 12 of 263 Pseudo Genes (multiple problems) :: 8 of 263 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Halioglobus japonicus" /mol_type="genomic DNA" /strain="NBRC 107739" /isolation_source="Western North Pacific Station S1" /culture_collection="NBRC:107739" /type_material="type strain of Halioglobus japonicus" /db_xref="taxon:930805" /country="Pacific Ocean: Western North Pacific Station S1" /collection_date="09-Feb-2010" protein /locus_tag="BST95_12845" /inference="COORDINATES: protein motif:HMM:PF12228.6" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKRIVLGVLG VIVLAATWLW HTWDQLSLQP TASEWQPSAA AAAAQQPQPR ESCRNNNPLR 61 QPFFGDVHVH TSVSFDARSR DMLGDVDSAY RFARGMRVQL APYDAAAEDA RFAQLPTALD 121 FAAVTDHAEW VGEVFACSQP EHPAYTSEAC RAYRQRPESN PGSDGPSVGG EDADRFRNIM 181 GFGDRNTAIC GPDNQWCRDA LKQAWEINQA VTEAHYDRSA DCEFTTFHGY EYSNSVSMSK 241 VHRNILFRNE IVPELPVSSL EEPDVVRLWE KMDTLCNQTD GGCEAISIPH NPNVSSGRMF 301 YVPYRDEPLS EQQRLASLRA RMEPVVEMMQ IKGESECRPG MWNVVGEDEW CDFEKIRGLD 361 WQAPEDCEDG YSAGAIIGVN CQSRLDFARY ALLEGVAEEA RIGVNPYRFG MAGSTDTHNA 421 LPGAVSEQDY PGCCGEGDAT TLSRLNNAPG FAGKPVTYRN PGGLMGVWAE ENSRDSLFDA 481 MQRREVFATS GPVLCPACLR AGTCRHPSVT VARLRQAMPA ACQWERYCPR QQNRTPPVCR 541 QCGRRSP //