LOCUS       AQA18998.1               547 aa    PRT              BCT 03-FEB-2017
DEFINITION  Halioglobus japonicus hypothetical protein protein.
ACCESSION   CP019450-2537
PROTEIN_ID  AQA18998.1
SOURCE      Halioglobus japonicus
  ORGANISM  Halioglobus japonicus
            Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales;
            Halieaceae; Halioglobus.
REFERENCE   1  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Trade-off between light-utilization and light-protection in marine
            flavobacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean
            Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha,
            Kashiwa-shi, Chiba 277-8564, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Sprai v. 0.9.5.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.22x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/25/2017 14:24:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,896
            CDS (total)                       :: 3,844
            Genes (coding)                    :: 3,581
            CDS (coding)                      :: 3,581
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 263
            Pseudo Genes (ambiguous residues) :: 0 of 263
            Pseudo Genes (frameshifted)       :: 228 of 263
            Pseudo Genes (incomplete)         :: 31 of 263
            Pseudo Genes (internal stop)      :: 12 of 263
            Pseudo Genes (multiple problems)  :: 8 of 263
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Halioglobus japonicus"
                     /mol_type="genomic DNA"
                     /strain="NBRC 107739"
                     /isolation_source="Western North Pacific Station S1"
                     /culture_collection="NBRC:107739"
                     /type_material="type strain of Halioglobus japonicus"
                     /db_xref="taxon:930805"
                     /country="Pacific Ocean: Western North Pacific Station S1"
                     /collection_date="09-Feb-2010"
     protein         /locus_tag="BST95_12845"
                     /inference="COORDINATES: protein motif:HMM:PF12228.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKRIVLGVLG VIVLAATWLW HTWDQLSLQP TASEWQPSAA AAAAQQPQPR ESCRNNNPLR
       61 QPFFGDVHVH TSVSFDARSR DMLGDVDSAY RFARGMRVQL APYDAAAEDA RFAQLPTALD
      121 FAAVTDHAEW VGEVFACSQP EHPAYTSEAC RAYRQRPESN PGSDGPSVGG EDADRFRNIM
      181 GFGDRNTAIC GPDNQWCRDA LKQAWEINQA VTEAHYDRSA DCEFTTFHGY EYSNSVSMSK
      241 VHRNILFRNE IVPELPVSSL EEPDVVRLWE KMDTLCNQTD GGCEAISIPH NPNVSSGRMF
      301 YVPYRDEPLS EQQRLASLRA RMEPVVEMMQ IKGESECRPG MWNVVGEDEW CDFEKIRGLD
      361 WQAPEDCEDG YSAGAIIGVN CQSRLDFARY ALLEGVAEEA RIGVNPYRFG MAGSTDTHNA
      421 LPGAVSEQDY PGCCGEGDAT TLSRLNNAPG FAGKPVTYRN PGGLMGVWAE ENSRDSLFDA
      481 MQRREVFATS GPVLCPACLR AGTCRHPSVT VARLRQAMPA ACQWERYCPR QQNRTPPVCR
      541 QCGRRSP
//