LOCUS       AQA18586.1               618 aa    PRT              BCT 03-FEB-2017
DEFINITION  Halioglobus japonicus propionyl-CoA synthetase protein.
ACCESSION   CP019450-2063
PROTEIN_ID  AQA18586.1
SOURCE      Halioglobus japonicus
  ORGANISM  Halioglobus japonicus
            Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales;
            Halieaceae; Halioglobus.
REFERENCE   1  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Trade-off between light-utilization and light-protection in marine
            flavobacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean
            Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha,
            Kashiwa-shi, Chiba 277-8564, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Sprai v. 0.9.5.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.22x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/25/2017 14:24:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,896
            CDS (total)                       :: 3,844
            Genes (coding)                    :: 3,581
            CDS (coding)                      :: 3,581
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 263
            Pseudo Genes (ambiguous residues) :: 0 of 263
            Pseudo Genes (frameshifted)       :: 228 of 263
            Pseudo Genes (incomplete)         :: 31 of 263
            Pseudo Genes (internal stop)      :: 12 of 263
            Pseudo Genes (multiple problems)  :: 8 of 263
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Halioglobus japonicus"
                     /mol_type="genomic DNA"
                     /strain="NBRC 107739"
                     /isolation_source="Western North Pacific Station S1"
                     /culture_collection="NBRC:107739"
                     /type_material="type strain of Halioglobus japonicus"
                     /db_xref="taxon:930805"
                     /country="Pacific Ocean: Western North Pacific Station S1"
                     /collection_date="09-Feb-2010"
     protein         /gene="prpE"
                     /locus_tag="BST95_10410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007228903.1"
                     /note="catalyzes the formation of propionyl-CoA using
                     propionate as a substrate; PrpE from Ralstonia
                     solanacearum can produce acetyl-, propionyl-, butyryl- and
                     acrylyl-coenzyme A, and Salmonella enterica produces
                     propionyl- and butyryl-coenzyme A; not expressed in
                     Escherichia coli when grown on propionate/minimal media;
                     ATP-dependent; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MDNLDRWREA AQAVHWFKTP QQVLDDSEPP FYRWFPDGQT NACYNALDVH VAEGRGEQTA
       61 LIYDSPVTDT CRRYTYTQLL DQVARFAGVL ADHGVGRGDR VIVYMPMVPE ALIAMLACAR
      121 LGAVHSVVFG GFASNELAVR IDDATPKLIV SASCGVEPNR IVAYKPLLDA AIELAQHKPD
      181 NCVILQRPMQ PAELIAGRDV DWTQAMADAR AVPCTPVAAN DPLYVLYTSG TTGQPKGVVR
      241 DTGGSIVALK WSMKAIYDVE PGDVYWAASD VGWVVGHSYI VYGPLFSGCA TVIYEGKPVG
      301 TPDPGAFWRV IEDYQVKVLF TAPTAFRAIK KEDPAGKYLQ QYNVSSLRSL FLAGERCDPS
      361 TLAWAQQQLK VPVIDHWWQT ETGWPICANC LGIEALPIVP GSPARPVPGY YVQVLDGNGE
      421 QVSAGEIGAL VVKSPLPPGT FTTLWQAEER YQSAYFARYP GYYETGDAGY IDANGYVFVM
      481 ARTDDVINVA GHRLSTGAME EVLAEHPDVA ECAVVGVADP MKGQLPLGLL VLNAGAERAT
      541 ADVVRESLQL VRDKIGPVAA FKLCTVVERL PKTRSGKILR GTMRSIADGE PWKMPATIDD
      601 PVILDEITEA LRTLGYAA
//