LOCUS       AQA17672.1               560 aa    PRT              BCT 03-FEB-2017
DEFINITION  Halioglobus japonicus hypothetical protein protein.
ACCESSION   CP019450-968
PROTEIN_ID  AQA17672.1
SOURCE      Halioglobus japonicus
  ORGANISM  Halioglobus japonicus
            Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales;
            Halieaceae; Halioglobus.
REFERENCE   1  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Trade-off between light-utilization and light-protection in marine
            flavobacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean
            Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha,
            Kashiwa-shi, Chiba 277-8564, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Sprai v. 0.9.5.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.22x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/25/2017 14:24:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,896
            CDS (total)                       :: 3,844
            Genes (coding)                    :: 3,581
            CDS (coding)                      :: 3,581
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 263
            Pseudo Genes (ambiguous residues) :: 0 of 263
            Pseudo Genes (frameshifted)       :: 228 of 263
            Pseudo Genes (incomplete)         :: 31 of 263
            Pseudo Genes (internal stop)      :: 12 of 263
            Pseudo Genes (multiple problems)  :: 8 of 263
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Halioglobus japonicus"
                     /mol_type="genomic DNA"
                     /strain="NBRC 107739"
                     /isolation_source="Western North Pacific Station S1"
                     /culture_collection="NBRC:107739"
                     /type_material="type strain of Halioglobus japonicus"
                     /db_xref="taxon:930805"
                     /country="Pacific Ocean: Western North Pacific Station S1"
                     /collection_date="09-Feb-2010"
     protein         /locus_tag="BST95_04895"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /transl_table=11
BEGIN
        1 MRLFVPLALL FIVALLPRLY SAQTLGWDWD GSGSFTLINF DEGGSCRAAL EGFSYSPFIG
       61 YQTIALASAS GAVPPDGAVD SAAVAKRYCH SPLHILVARS YSALLGAASV VVLALLAMQL
      121 VPGNPAVALS AAALLALSGF HISQAQSGTV DAASTFFIYS FLAVLAWALR RRSALAYGLA
      181 VLACVAAVWA KYWVFALLAW LALIPYDGWR YIRLGFSGAR IVLVVLAASV LVAAMANPAW
      241 PAWGLLPLLV IYLALVPWRN VPLPMAACWL ALPFLCWAVL QIDLVATYTQ GGVAGKFGSG
      301 YAAIGEHKWL RNLFNIPMWL LVAIGLPALV FVPRGIAEFS RLAEDRRLWV CALPMLGFGL
      361 FMAFLAPVTY YRHYLPLLPA VALLAALGLH ATPWGQRRWF LMLFFAWPAA LAWDMVSDYH
      421 NDPRKALRPW NAAHQDAQVF SSYYVNPPPG RYALFRPEYA AGEGTVLRRA DYLILSENWY
      481 DTAFANELNG PRVNVPERLV KTTPEYAAFY RSALAGEHPL LVPDVAYDLQ HFMPELLFHR
      541 ALYGNVQLFV GDLKVFRIRK
//