LOCUS       AQA17505.1               729 aa    PRT              BCT 03-FEB-2017
DEFINITION  Halioglobus japonicus primosomal protein N' protein.
ACCESSION   CP019450-769
PROTEIN_ID  AQA17505.1
SOURCE      Halioglobus japonicus
  ORGANISM  Halioglobus japonicus
            Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales;
            Halieaceae; Halioglobus.
REFERENCE   1  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Trade-off between light-utilization and light-protection in marine
            flavobacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean
            Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha,
            Kashiwa-shi, Chiba 277-8564, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Sprai v. 0.9.5.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.22x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/25/2017 14:24:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,896
            CDS (total)                       :: 3,844
            Genes (coding)                    :: 3,581
            CDS (coding)                      :: 3,581
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 263
            Pseudo Genes (ambiguous residues) :: 0 of 263
            Pseudo Genes (frameshifted)       :: 228 of 263
            Pseudo Genes (incomplete)         :: 31 of 263
            Pseudo Genes (internal stop)      :: 12 of 263
            Pseudo Genes (multiple problems)  :: 8 of 263
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Halioglobus japonicus"
                     /mol_type="genomic DNA"
                     /strain="NBRC 107739"
                     /isolation_source="Western North Pacific Station S1"
                     /culture_collection="NBRC:107739"
                     /type_material="type strain of Halioglobus japonicus"
                     /db_xref="taxon:930805"
                     /country="Pacific Ocean: Western North Pacific Station S1"
                     /collection_date="09-Feb-2010"
     protein         /locus_tag="BST95_03895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007230020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTILRLALPT PLRALFDYLP PAGSQSAQLR PGQRLSVPFG HRELCGVLVE VMADPQSTDF
       61 ELKQASELLD PEPLLPKTLQ KLCQWAADYY QHPIGEVLAA AFPTRLRKGN PHRGLTIPGW
      121 QLTTQGKGLG EGALGRSPRQ AEALAALRQQ GPTSGQQLAA AGIKRPALKS LQDKGLAEPC
      181 EISPAHCHAS ARPGLALNNE QAQALQALIA TSEGFSCHLL EGVTGSGKTE VYLQLIAHCL
      241 AQGKQALVLI PEIGLTPQTL ARFEQRFDTD IAVLHSGLGE VQRERAWEAA RTGIARIVIG
      301 TRSAVLTPMV DPGLIVVDEE HDSSFKQQDG FRYSARDVAV KRGQLERCQV LLGSATPSLE
      361 TLHNALQGRY QHHRLTERAG SGELPQLTVL DVRRQPLQAG LSEALVKAVG DTLARGEQSL
      421 LFLNRRGFAP TVQCHDCGWI ADCNHCDARL TLHRRQRRLR CHHCGHSEPL PGSCPQCRSE
      481 QLLTQGVGTE QAEEFLRQRF PDTALYRVDS DSMQGREAMQ ALVDQVNEGQ PCILLGTQML
      541 TKGHHFPAVS LVGVIDMDAL LFSGDFRGEE RAAQLLTQVA GRAGRADTGG QVLIQTHHPE
      601 HPCLQGTLSQ TYHEQALAML AERLERNLPP TGNLALLRSD CTDARQGEHF LQTLRHNAQR
      661 QMPAGVALIG PLPAPMQRRA GRFRAQLLIH GGERAQVHRA ARLLVSIAQR QKVARNLSWS
      721 VDIDPQDMF
//