LOCUS AQA17171.1 843 aa PRT BCT 03-FEB-2017 DEFINITION Halioglobus japonicus nitrite reductase large subunit protein. ACCESSION CP019450-390 PROTEIN_ID AQA17171.1 SOURCE Halioglobus japonicus ORGANISM Halioglobus japonicus Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Halieaceae; Halioglobus. REFERENCE 1 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Trade-off between light-utilization and light-protection in marine flavobacteria JOURNAL Unpublished REFERENCE 2 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Direct Submission JOURNAL Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8564, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Sprai v. 0.9.5.1.3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.22x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/25/2017 14:24:47 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,896 CDS (total) :: 3,844 Genes (coding) :: 3,581 CDS (coding) :: 3,581 Genes (RNA) :: 52 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 263 Pseudo Genes (ambiguous residues) :: 0 of 263 Pseudo Genes (frameshifted) :: 228 of 263 Pseudo Genes (incomplete) :: 31 of 263 Pseudo Genes (internal stop) :: 12 of 263 Pseudo Genes (multiple problems) :: 8 of 263 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Halioglobus japonicus" /mol_type="genomic DNA" /strain="NBRC 107739" /isolation_source="Western North Pacific Station S1" /culture_collection="NBRC:107739" /type_material="type strain of Halioglobus japonicus" /db_xref="taxon:930805" /country="Pacific Ocean: Western North Pacific Station S1" /collection_date="09-Feb-2010" protein /locus_tag="BST95_01990" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008251778.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTQRLVVVGN GPVGHRLVEQ VVDAGAWDIT VFGEEPRVAY DRVHLTGWFE ERSAEPLNMV 61 VPGFYEQHGI TCHVGDKVIA VDLAAKTVTS EKGLTVAYDK LVLATGSFPF VPPVPGHDRD 121 NCFVYRTIED LEAITEASKS ARVGTVVGGG LLGLEAAKAL HDLGLQTHVV EFAPRLMAVQ 181 VDDGGGALLK RKIEELGVSV HTSKNTQQIT DGDGAVHKMC FADDSELNTD LIVFSAGIRP 241 QDELARSSGL AIGERGGIVI NNFCQTSDED VYAVGENALW NGRIYGLIAP GNTMAQVAAE 301 HLCGTGDTEF NGADMSTKLK LMGVDVASVG DAHGNTEGAL NYTYINEVEQ VYKKIVVSAD 361 QKHLLGAVLV GDAEEYGNLL QFALNKIELP DQPDAMILPS VDGAASTLGV DALPDTATIC 421 SCNNVSKGDL VAAVAGGCCT MGDLKADTTA ATGCGGCTAL VTQVMNAELE NLGYEVNTDI 481 CEHFAYTRQD LYSLIRVENI RSFDELLTKH GKGQGCDICK PAVASILATC WNDYVLEKEH 541 QGLQDTNDRF LANMQKDGTY SVVPRVPGGE ITPDKLIVLG EVAKKYDLYT KITGGQRVDL 601 FGARMEQLPA IWGELIDAGF ETGHAYGKSL RTVKSCVGST WCRYGVQDSV GMAIDLENRY 661 KGLRSPHKLK MAVSGCTREC AEAQCKDVGV IATEKGWNLY VCGNGGMKPR HADLFATDLD 721 DATLIRYIDR FFMFYVRTAD RLQRTSVWME NMEGGLEYLQ KVIIEDSLGI AEELEQQMAA 781 VVGTYQCEWK TTIEDPEKVG RFNHFVNSDA TDDNVVFVRE REQIRPATTE EKCDPADVLA 841 TAS //