LOCUS       AQA17171.1               843 aa    PRT              BCT 03-FEB-2017
DEFINITION  Halioglobus japonicus nitrite reductase large subunit protein.
ACCESSION   CP019450-390
PROTEIN_ID  AQA17171.1
SOURCE      Halioglobus japonicus
  ORGANISM  Halioglobus japonicus
            Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales;
            Halieaceae; Halioglobus.
REFERENCE   1  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Trade-off between light-utilization and light-protection in marine
            flavobacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4085301)
  AUTHORS   Kumagai,Y., Yoshizawa,S. and Kogure,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean
            Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha,
            Kashiwa-shi, Chiba 277-8564, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Sprai v. 0.9.5.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.22x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/25/2017 14:24:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,896
            CDS (total)                       :: 3,844
            Genes (coding)                    :: 3,581
            CDS (coding)                      :: 3,581
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 263
            Pseudo Genes (ambiguous residues) :: 0 of 263
            Pseudo Genes (frameshifted)       :: 228 of 263
            Pseudo Genes (incomplete)         :: 31 of 263
            Pseudo Genes (internal stop)      :: 12 of 263
            Pseudo Genes (multiple problems)  :: 8 of 263
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Halioglobus japonicus"
                     /mol_type="genomic DNA"
                     /strain="NBRC 107739"
                     /isolation_source="Western North Pacific Station S1"
                     /culture_collection="NBRC:107739"
                     /type_material="type strain of Halioglobus japonicus"
                     /db_xref="taxon:930805"
                     /country="Pacific Ocean: Western North Pacific Station S1"
                     /collection_date="09-Feb-2010"
     protein         /locus_tag="BST95_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008251778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTQRLVVVGN GPVGHRLVEQ VVDAGAWDIT VFGEEPRVAY DRVHLTGWFE ERSAEPLNMV
       61 VPGFYEQHGI TCHVGDKVIA VDLAAKTVTS EKGLTVAYDK LVLATGSFPF VPPVPGHDRD
      121 NCFVYRTIED LEAITEASKS ARVGTVVGGG LLGLEAAKAL HDLGLQTHVV EFAPRLMAVQ
      181 VDDGGGALLK RKIEELGVSV HTSKNTQQIT DGDGAVHKMC FADDSELNTD LIVFSAGIRP
      241 QDELARSSGL AIGERGGIVI NNFCQTSDED VYAVGENALW NGRIYGLIAP GNTMAQVAAE
      301 HLCGTGDTEF NGADMSTKLK LMGVDVASVG DAHGNTEGAL NYTYINEVEQ VYKKIVVSAD
      361 QKHLLGAVLV GDAEEYGNLL QFALNKIELP DQPDAMILPS VDGAASTLGV DALPDTATIC
      421 SCNNVSKGDL VAAVAGGCCT MGDLKADTTA ATGCGGCTAL VTQVMNAELE NLGYEVNTDI
      481 CEHFAYTRQD LYSLIRVENI RSFDELLTKH GKGQGCDICK PAVASILATC WNDYVLEKEH
      541 QGLQDTNDRF LANMQKDGTY SVVPRVPGGE ITPDKLIVLG EVAKKYDLYT KITGGQRVDL
      601 FGARMEQLPA IWGELIDAGF ETGHAYGKSL RTVKSCVGST WCRYGVQDSV GMAIDLENRY
      661 KGLRSPHKLK MAVSGCTREC AEAQCKDVGV IATEKGWNLY VCGNGGMKPR HADLFATDLD
      721 DATLIRYIDR FFMFYVRTAD RLQRTSVWME NMEGGLEYLQ KVIIEDSLGI AEELEQQMAA
      781 VVGTYQCEWK TTIEDPEKVG RFNHFVNSDA TDDNVVFVRE REQIRPATTE EKCDPADVLA
      841 TAS
//