LOCUS AQA17053.1 602 aa PRT BCT 03-FEB-2017 DEFINITION Halioglobus japonicus RNA polymerase sigma factor RpoD protein. ACCESSION CP019450-257 PROTEIN_ID AQA17053.1 SOURCE Halioglobus japonicus ORGANISM Halioglobus japonicus Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Halieaceae; Halioglobus. REFERENCE 1 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Trade-off between light-utilization and light-protection in marine flavobacteria JOURNAL Unpublished REFERENCE 2 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Direct Submission JOURNAL Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8564, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Sprai v. 0.9.5.1.3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.22x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/25/2017 14:24:47 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,896 CDS (total) :: 3,844 Genes (coding) :: 3,581 CDS (coding) :: 3,581 Genes (RNA) :: 52 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 263 Pseudo Genes (ambiguous residues) :: 0 of 263 Pseudo Genes (frameshifted) :: 228 of 263 Pseudo Genes (incomplete) :: 31 of 263 Pseudo Genes (internal stop) :: 12 of 263 Pseudo Genes (multiple problems) :: 8 of 263 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Halioglobus japonicus" /mol_type="genomic DNA" /strain="NBRC 107739" /isolation_source="Western North Pacific Station S1" /culture_collection="NBRC:107739" /type_material="type strain of Halioglobus japonicus" /db_xref="taxon:930805" /country="Pacific Ocean: Western North Pacific Station S1" /collection_date="09-Feb-2010" protein /locus_tag="BST95_01315" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009025334.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MNDVVQQQSR LKSLIAKGKE QGYLTYAEVN DHLPEDISDP DQVEDIIQMI NDMGIQVFET 61 APDADELLMT EGDSSADDIA AAEAAAALAA VETEAGRTTD PVRMYMREMG TVELLTREGE 121 IVIAKRIEEG IRELMAALAL YPGAVKSILD EYDLVAKEER RLADIMVGYL DPAEHVPSAA 181 EMAEAAANKS DDDDDEESDN GPDPVEAKKR FSALKRQYNK TEKAIAAKGR DDATSQKEME 241 KLGELFKFFK LTPRVFDPLT DSPRNILVGV RDQEREIMRL ATRICGMPRK EFISSFQGSE 301 SDLKWVSRHA RKKDYGTKLS AEKEAIQRCQ RRIQQLEEQC GLTVTEIKEI NRRMSMGEAR 361 ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY RRGYKFSTYA 421 TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML QEMGREPTPE ELGERMDMPE 481 DKVRKVLKIA KEPISMETPI GDDEDSHLGD FIEDNTISSP VDAATGQGLQ EATKEVLAGL 541 TAREAKVLRM RFGIDMNTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP TRSDYLRSFL 601 DE //