LOCUS AQA16979.1 434 aa PRT BCT 03-FEB-2017 DEFINITION Halioglobus japonicus dicarboxylate/amino acid:cation symporter protein. ACCESSION CP019450-165 PROTEIN_ID AQA16979.1 SOURCE Halioglobus japonicus ORGANISM Halioglobus japonicus Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Halieaceae; Halioglobus. REFERENCE 1 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Trade-off between light-utilization and light-protection in marine flavobacteria JOURNAL Unpublished REFERENCE 2 (bases 1 to 4085301) AUTHORS Kumagai,Y., Yoshizawa,S. and Kogure,K. TITLE Direct Submission JOURNAL Submitted (23-JAN-2017) Marine Microbiology, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8564, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Sprai v. 0.9.5.1.3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 25.22x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/25/2017 14:24:47 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,896 CDS (total) :: 3,844 Genes (coding) :: 3,581 CDS (coding) :: 3,581 Genes (RNA) :: 52 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 263 Pseudo Genes (ambiguous residues) :: 0 of 263 Pseudo Genes (frameshifted) :: 228 of 263 Pseudo Genes (incomplete) :: 31 of 263 Pseudo Genes (internal stop) :: 12 of 263 Pseudo Genes (multiple problems) :: 8 of 263 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Halioglobus japonicus" /mol_type="genomic DNA" /strain="NBRC 107739" /isolation_source="Western North Pacific Station S1" /culture_collection="NBRC:107739" /type_material="type strain of Halioglobus japonicus" /db_xref="taxon:930805" /country="Pacific Ocean: Western North Pacific Station S1" /collection_date="09-Feb-2010" protein /locus_tag="BST95_00830" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008292775.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSLTNRILIA MVAGIVTGSV INLIMHSAGI GDGIKQIIDG YLVGGLFDVI GRIFVASLKL 61 LVVPLVLVSL ICGSSSLGDS ARMGPIAVKT LGFYLATTAI AITLALVFAA LISPGSGVEM 121 AGAAAFEPRP APPLGDVLVD IFPSNPVRAM ADGKMLQIIV FALLFGYAIS HAGEPGRRMA 181 SFFRDMDAII MKMVEILMTL APYGVFALLS KLFSNLGISA ILDLATYVFT VIGVLLLHAL 241 GVYTLLLKSM TGLSPRMLLK KMRPIWAFAF STASSGATLP ITLRTVEKRL GVHNSVAGFT 301 VPLGATINMD GTAIMQGVAT VFIAQVYGVD LSMGDFITVI LTATLASIGT AAVPGVGLIT 361 LALVLEQAGL PVEGIALIIG VDRLLDMVRT AVNVTGDATI SVIVGKSENQ FEQGVYDDPK 421 ADQEADDAAV PARA //