LOCUS ANQ14571.1 1005 aa PRT BCT 15-JUL-2016 DEFINITION Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 sarcosine oxidase subunit alpha protein. ACCESSION CP016346-540 PROTEIN_ID ANQ14571.1 SOURCE Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 ORGANISM Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 1927156) AUTHORS Weinstock,M.T., Hesek,E.D., Wilson,C.M. and Gibson,D.G. TITLE Developing Vibrio natriegens as a novel, fast-growing host for biotechnology JOURNAL Unpublished REFERENCE 2 (bases 1 to 1927156) AUTHORS Weinstock,M.T., Fu,L., Schwartz,A.S., Brami,D., Gill,J. and Gibson,D.G. TITLE Direct Submission JOURNAL Submitted (01-JUL-2016) Synthetic Systems & DNA Technologies, Synthetic Genomics, Inc., 11149 North Torrey Pines Rd., La Jolla, CA 92037, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ This genome has a base modification file available. ##Genome-Assembly-Data-START## Assembly Method :: HGAP v. 2 Genome Coverage :: 178.8x Sequencing Technology :: PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 07/01/2016 12:02:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.3 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 4,654 CDS (total) :: 4,484 Genes (coding) :: 4,467 CDS (coding) :: 4,467 Genes (RNA) :: 170 rRNAs :: 13, 12, 12 (5S, 16S, 23S) complete rRNAs :: 13, 12, 12 (5S, 16S, 23S) tRNAs :: 129 ncRNAs :: 4 Pseudo Genes (total) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 10 of 17 Pseudo Genes (incomplete) :: 5 of 17 Pseudo Genes (internal stop) :: 3 of 17 Pseudo Genes (multiple problems) :: 1 of 17 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759" /mol_type="genomic DNA" /strain="ATCC 14048" /isolation_source="salt marsh mud" /culture_collection="ATCC:14048" /type_material="type strain of Vibrio natriegens" /db_xref="taxon:1219067" /chromosome="2" /country="USA: Georgia, Sapelo Island" protein /locus_tag="BA890_17665" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_020335223.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTQVNRISSQ SRVDQSKSIN FEFNGKSYPG YAGDTLASAL LANGVDVVGR SFKYSRPRGI 61 IAAGAEEPNA IFQLGATEAT QVPNIRATQQ ELYDGLVCQS TNGWPNVDKD VMGVLGKVGG 121 GMMPPGFYYK TFMYPKSMWE TYEKYIRSAA GLGRSPLEND PDRYENINQH CDVLVVGAGP 181 AGLMAALTAA RSGARVILAD EQSEMGGNLL NTKEQVDNRP ATQWVQEVLA ELEACPEVKL 241 LPRSTVNGYH DHNFLTIHER CTDHLTDLAP KHTARQRLHR VRAKWVVLAS GSHERPLVFG 301 NNDLPGSMLC SAVSTYINRY SVVPGQSLVV MTTSDSGYQT ALDWHSAGRK VKAVVDTRAN 361 ADSAIIQSVI KAGIRVIKGS AVVEALGSKR VTGVRINKLD ASGKKVEGSS ETIQVDTVAT 421 SGGYSPAVHL SCHTGSRPVW NEEVIGFVPG ETKQKQLIAG AINGNFTTKG AMQEGIEAGN 481 KAIQELGLSA VDVTLPKTNE LPVAKPMALF HIPHPKKTSK APKQFVDFQN DVTAAGIELA 541 CREGFESIEH VKRYTAMGFG TDQGKLGNIN GMAIAANALN KSIPETGTTI FRPNYTPVTF 601 GAIAGRNCKE LFDPKRYTAM HQWHLDNGAL FEDVGQWKRP WYFPKAAETM QQALDRECLA 661 VRNSVGILDA STLGKIDIQG KDAREFLGRI YSNAWAKLPV GKCRYGLMCG EDGMVFDDGV 721 TSCLGENHFL MTTTTGGAAR VLEWLELYHQ TEWPELEVYF TSVTDHWATA TISGPNSRKL 781 LQELTDCDLS KDNFAFMDWK QATVAGVPAR IFRISFTGEL SFEINVQANY GLHVWKKLME 841 HGAKYDITPY GTETMHILRA EKGFIIAGQD TDGSVHPYDL GMGWCVANSK PFSFIGKRGM 901 AREDCVRENR KQLVGLKTID PNVVIPEGSQ GVLDPNAPIP VPMVGHITSS YWSANLNRSI 961 AMGFVKGGLD RMGEKVYYPQ VDGTVIEAEI CSTVFLDPKG ERQNV //