LOCUS ANI12224.1 780 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 DNA degradation protein EddB protein. ACCESSION CP015877-5533 PROTEIN_ID ANI12224.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_28060" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003118280.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MHPLRNAALL GGLALLGLPV ANAAELIISE YVEGSGNNKA LEFYNSGSQV LDLSAYRVEF 61 YFNGASAAGR SIDLSGSLAP GKTFVLANGV ADPALLALAS QRVEGSWFNG NDAVLLRRRG 121 GEILDSLGQV GFNPGTTWGS GDVQTLDRSL VRKADIRDGD SDPSDAFDPA AQWLGYPRDT 181 FANLGQHGAG EPGGGEEAGL RPIHEVQGAG AESPLVNQRV AIEGVVVGDF QNASELKGFY 241 VQQEDATVDG DPATSEGIFV YDGGNGSDVK LGDRVRVTGQ VREFNGLTEL VGPLQVSVLA 301 SGVALPTPAG ISLPLASADA LERYEGMRVQ LRQTLTVNEV YNLGRYGEVL LSSGGRQMTP 361 TNVVAPGEQA KAMQARNDLD RILLDDGRSG QNPDPIRYPA PELSAYNSLR VGDRTSAIDG 421 VLDYSAGSYR IQPLQTPTFE AANPRPAQPA VEGRLRVASF NVLNYFNGDG KGGGFPTSRG 481 ANTAEEFQRQ KAKIVAAILA SKADIVGLME IENDGYGEFS AIADLVNGLN ASLPQGQRYA 541 FVNPNRAKLG SDEIAVGLIY RGDKVRTYRS AAVLDSSVNP EFDDTRNRPT LAQTFQEING 601 GERLTIAVNH LKSKGSACDG DPDTGDGQGN CNLTRARAAQ ALVDWLAGDP TGAKEPDRLI 661 IGDLNSYAKE DPVNVIRSAG YTDLVARQAG AGKGYSYVFS GQSGYLDHAL ANASLARQVR 721 GAVEWHINAD EPRVLDYNVE FKTPRQQDSL YNAEPYRASD HDPVVIGIDL RRVAMKKHRR //