LOCUS       ANI11798.1               523 aa    PRT              BCT 02-JUN-2016
DEFINITION  Pseudomonas aeruginosa SJTD-1 malate:quinone oxidoreductase
            protein.
ACCESSION   CP015877-5094
PROTEIN_ID  ANI11798.1
SOURCE      Pseudomonas aeruginosa SJTD-1
  ORGANISM  Pseudomonas aeruginosa SJTD-1
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6243825)
  AUTHORS   Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
  TITLE     Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
            bacterium capable of degrading long-chain alkanes and crude oil
  JOURNAL   J. Bacteriol. 194 (17), 4783-4784 (2012)
   PUBMED   22887679
REFERENCE   2  (bases 1 to 6243825)
  AUTHORS   Liang,R., Tao,F., Liu,H. and Liu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2012) State Key Laboratory of Microbial
            Metabolism, School of Life Sciences and Biotechnology, Shanghai
            Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
            China
REFERENCE   3  (bases 1 to 6243825)
  AUTHORS   Liang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2016) State Key Laboratory of Microbial
            Metabolism, School of Life Sciences and Biotechnology, Shanghai
            Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
            China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Source bacteria available from Dr. Rubing Liang (School of Life
            Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
            200240, China).
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: ALLPATH-LG v. 2015; GapCloser v. 2015
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 200x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/25/2016 16:12:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,696
            CDS (total)                       :: 5,617
            Genes (coding)                    :: 5,603
            CDS (coding)                      :: 5,603
            Genes (RNA)                       :: 79
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 7 of 14
            Pseudo Genes (internal stop)      :: 3 of 14
            Pseudo Genes (multiple problems)  :: 1 of 14
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa SJTD-1"
                     /mol_type="genomic DNA"
                     /strain="SJTD-1"
                     /isolation_source="soil"
                     /db_xref="taxon:1193501"
                     /country="China: Shanghai"
     protein         /locus_tag="A214_25860"
                     /inference="EXISTENCE: similar to AA
                     sequence:SwissProt:Q9HYF4.1"
                     /note="malate dehydrogenase; catalyzes the oxidation of
                     malate to oxaloacetate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKKILLMLLC VSVLGCSKNS VESEKPVDVL LIGGGIMSAT LGTYLNELEP GWTIEMVERL
       61 DKVAEESSNG WNNAGTGHSA FCELNYTSEA ADGSMDISKA VAINENFEIS KQFWAYQVDR
      121 KVLNDPKSFI NNVPHMSFVW GDDNVAFLKK RHAALQHSSL FRGMEYSEDP EQIKQWVPLV
      181 MEGREPGQKI AATRMSIGTD VNFGEITRQL VGSLSAKDTF KLRLQHEVRD LKRNDDNTWT
      241 VTMVDLANGD KETSVKARFV FIGAGGGALK LLQMSGIPEA EGYAGFPVGG SFLATTNPDV
      301 VKRHLAKVYG KASVGSPPMS VPHLDTRMID GKPVLLFGPF ATFSTKFLKN GSLWDLPGSV
      361 TSSNIGPMFN AGIDNFDLSQ YLIGQLMLSQ DDRMASLREY FPEARDEDWK LVQAGQRVQI
      421 IKKDAEKGGV LQFGTEVVTA ADGSVAALLG ASPGASTAAP IMLSVLEKAF KDKVATPEWQ
      481 ARLKEIVPSY GRKLNNDIEL TNSTRAWSSE RLQLIHVPVQ PEA
//