LOCUS ANI11485.1 670 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 excinuclease ABC subunit B protein.
ACCESSION CP015877-4772
PROTEIN_ID ANI11485.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /locus_tag="A214_24225"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_011914094.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MDTFQLDSRF KPAGDQPEAI RQMVEGLEAG LSHQTLLGVT GSGKTFSIAN VIAQVQRPTL
61 VLAPNKTLAA QLYGEFKTFF PHNSVEYFVS YYDYYQPEAY VPSSDTYIEK DSSINDHIEQ
121 MRLSATKALL ERPDAIIVAT VSSIYGLGDP ASYLKMVLHL DRGDRIDQRE LLRRLTSLQY
181 TRNDMDFARA TFRVRGDVID IFPAESDLEA IRVELFDDEV ESLSAFDPLT GEVIRKLPRF
241 TFYPKSHYVT PRETLLEAVD QIKAELKERL DYLRNSNKLV EAQRLEQRTR FDLEMILELG
301 YCNGIENYSR YLSGRAPGEP PPTLYDYLPA NSLLVIDESH VSVPQVGAMF KGDRSRKETL
361 VEYGFRLPSA LDNRPLRFEE WEAVSPQTIF VSATPGPYEA EHAGRIIEQV VRPTGLVDPE
421 IEVRPAMTQV DDLLSQIRQR VAKDERVLVT TLTKRMAEDL TDYLGDHDVR VRYLHSDIDT
481 VERVEIIRDL RAGAFDVLVG INLLREGLDM PEVSLVAILD ADKEGFLRSE RSLIQTIGRA
541 ARNLHGKAIL YADNVTGSMQ RAIDETERRR AKQIAFNQAH GIVPKGVRKD IKDILEGAVV
601 PGARGKRKGV AKVAEESGRY ENELRSPSEI SKRIRQLEEK MYQLARDLEF EAAAQLRDEI
661 QTLRERLVNV
//