LOCUS ANI11413.1 948 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 PbsX family transcriptional regulator protein. ACCESSION CP015877-4698 PROTEIN_ID ANI11413.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_23830" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003109603.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRFSKKGIAV LRLPSRRNTL RPIERPLAWL AGLALALCAG TAAGAAGGPS SVAFWYAERP 61 PLAELSQFDW VVLEAAHLKP ADVGYLKEQG STPFAYLSVG EFDGDAAAIA DSGLARGKSA 121 VRNQAWNSQV MDLAAPSWRA YLLKRAAELR KQGYAGLFLD TLDSFQLQAE ERREGQRRAL 181 ASFLAQLHRQ EPGLKLFFNR GFEVLPELPG VASAVAVESI HAGWDAAAGQ YREVPQDDRD 241 WLKGHLDALR AQGMPIVAID YLPPERRDEA RTLAARLRSE GYVPFVSTPA LDYLGVSDVE 301 VQPRRIALLY DPREGDLTLS PGHVYLGGLL EYLGYRVDYL PTDQPLPERP LSGLYAGVVT 361 WMTSGPPLAS DAFDNWIAAR LDEKVPVAFL AGLPTENDGL LQRLGIRRLS QKLKVKPSTE 421 THDQALLGSF EAPLVIRIRD LPALTVLDPA RVTPALKLKG DGKEYVPVAT ADWGGFALAP 481 YVLEEGSEHR RWILDPFAFL RKALRLVPLP SPDATTENGR RIATVHIDGD GFVSRAEVPG 541 SPYAGQQVLE DFIKPYPFLT SVSVIEGEVG PKGMYPHLAR ELEPIARRIF ADDKVEVASH 601 TFSHPFFWQP QLAEQGENFE AQYGYKMAIP GYDKVDFVRE VIGARDYIEQ RLTTPRKPVK 661 MIFWSGDALP DAATIKLAYD AGLMNVNGGN TALTRAFPSL TGLYPLIRPT RGGVQYYAPI 721 INENVYTNLW QGPYYGFRGV IDTFALTDSP RRLRGLHLYY HFYSGTKQAS IRTMHQIYAA 781 MQAEHPLSLW MSDYIPRLEG LHRASLAKRA DGSWQLRGFA ALRTLRLDPA LGWPDLGRST 841 GVAGVRDLPQ GRYVHLSAAN AHLVLRDSRD PRPALEEANL PLKHWRYRDD GRVEFAFAGH 901 LPLRLVVRAA GDCRLSAAGK AFPGKAGNGL WTFELPMEQV RDGQLVCR //