LOCUS ANI11159.1 815 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 acyl-CoA dehydrogenase protein.
ACCESSION CP015877-4438
PROTEIN_ID ANI11159.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /gene="fadE"
/locus_tag="A214_22510"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_020305093.1"
/note="functions in fatty acid oxidation; converts
acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/transl_table=11
BEGIN
1 MLLLWLVVLV LGVAYLAHRR TPPAPALGIS AAYLILMGVF SHAPGWLLLV FWLLWLAVAL
61 PLALPDLRRR VLSGPLFAWF QKVLPPMSDT EREAIEAGTV WWDGELFSGR PDWQKLLDYP
121 KAQLTEEEQA FVDGPTEELC AMVSDWDIGQ RMDLPEEAWA FIKQHGFFGL IIPKEYGGKG
181 FSAFAHSQVV MKLATRSGDL ASTVMVPNSL GPAELLLHYG TDEQRQRYLP SLAKGDDIPC
241 FALTGPYAGS DAGGMTDVGI VCKGEWEGRE VLGLRLTWEK RYITLGPVAT LLGLAFKCHD
301 PDHLLGDEED LGITLALIPT DTPGVEIGRR HVPLGAAFMN GPNSGKDVFV PLEYIIGGQE
361 MIGKGWMMLM NCLSVGRSIS LPAVGTSAGK ASSYVSGRYA QVREQFNVPI AAFEGIQEAL
421 ARIGGNAWLM DSARILTANA VDLGEKPSVL SAILKYHLTE RGRECIAHAM DIHGGKGIIM
481 GPNNYLGRSW QGAPIFITVE GANILSRNLM IFGQGAIRCH PYVLKEMELA QREDKDQAAR
541 EFDALLVKHI GFAVGNAASS FLLSLSCGHL GNAPGDRISR PYFRALNRLA ASFALLADFS
601 MMLLGGELKR KERLSARLGD VLSYLYLGSA ALKRYHDLGN PDYLHPLLRW AMEENLGKAE
661 AALEDLLNNF PSRFFGCALK VLVLPFGRRH KGPGDELDAE IAEILGRPDD DPALQAILAG
721 AFLPKDPQDP VGALAHAFDA VRESAALEKT LHKAIKEGRV QPQAGQNPID AGAAAGVLSA
781 EQAQALHQAE AARRKVIDVD DFAKEELQLA DGRIR
//