LOCUS ANI11063.1 1844 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 helicase protein.
ACCESSION CP015877-4338
PROTEIN_ID ANI11063.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /locus_tag="A214_22000"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_015502751.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTVVSKTVEA TGVHEAARSL AESLRQYIEA QYHIRDEGLI KERHALLRRD ATIAQVPYVE
61 ATPVYKVGDP YDSLPIPNAA IDALTQLAGM GVGLYPHPYE HQSEALVSFL GDEATDLVVA
121 TGTGSGKTET FLMPVIGKLA IEGEERPASA ELPGCRAMLL YPMNALVNDQ LARIRRMLGN
181 PEAAKVLSKG RPRPIRFGSY TGRTPYPGRR SSGRDERFIK PLFEEFYRKV AEKSAVQMEL
241 ERIGRWPSKD LDAFYGRELA QTKTYVSGKK AGKQYIANNW GHRLVTQPGD RELMTRDEMQ
301 QRCPELLITN YSMLEYMLMR PIERGIFEQT RDWLKADPRN EFVLVLDEAH MYRGAGGAEV
361 ALLIRRLCAR LEIPRERMRC ILTSASLGSG PTAVEDGERF ARDLTGLPVG SSRRVRVIQG
421 TSEPRSLPRP ATREEAEALA EFDLGAFQNA ANDLGAAQMA AMELAARLNW QVPTAGDHAS
481 FRDWLFENMT DFGPLETLIA TVSGKAVRLD TLSEALFGEF PSDTAARAAD ALLALGSYAR
541 RRSDGRVLIP TRLHLFHRGL PGLHACVDPE CSQRLGGHAG PTILGRLHTK PLDRCYCTSK
601 GRVYELLTHR DCGAAFIRGY VSSDMDFVWH QPSGPLSEGG TIELIPIEIL VEENVHPRSR
661 HKDMWLHVPT GKLFPICPSD TSGYRKVKVP DKVAAGQVEI SFDECPVCMR RTRSSKNEPS
721 KVMDHVTKGE APFTALVRTQ MARQPASRTI DAKHPNGGRK VLIFSDGRQK AARLARDIPR
781 DIELDVFRQA VALACARLEA IPQEPRPNLS LYLAFLSVLS EHDLLIFDGQ DAKKIAAARA
841 EFERDCEGDL RQALDDDFEP SETPPARYRI ALLKLFCSNY YSLSGTTVGF VEPARAKLRK
901 LKDDIKAAGI ALGGEDVRAL AVAWIDALLR EFAFDPSLDP VLRCKAAGYF KPDWGSKGQF
961 DRAFAEALAR RPGWGKLAVE AIEAAFRSQL ASEKDKVWFL TPNTLRLRVD LSHVWAQCPD
1021 CTALMPLALG GTICLACGSE GVRLVDPLVS NYVAARKGFW RLPVQEALAS GARLSNLSVE
1081 EHTAQLSNRD RSSVHATTEL YELRFQDVLI EDSDRPIDVL SCTTTMEVGV DIGSLVAVAL
1141 RNVPPQRENY QQRAGRAGRR GASVSTVVTY SQTGPHDSHY FLNPEHIVAG APRTPEVKVD
1201 NPKIARRHVH AYLVQTFFHE LMGQGGYGPA EKTSMLEKSL GPTRQFFHGA RDTGLNLEGF
1261 GDWVSHRVLS AEGDLRASVA AWLPPSLDTG GRPLEEWLAE VAEELLTTLR RLSADVPSPA
1321 VSEDDGENKE VEDNENAGPN LEQEEFLEFL FFHGLLPSYA FPTSLCSFLV EKREKNLKGI
1381 LEVRTVQRPQ QSISQALSEY APGRLIVIDK KTYRSGGVFA DLPAGEVSRA RPLFATAKKL
1441 VHCEACSFVR DPHTAQGNDS TCPVCGGALK EETMIQPEVF GPECARELPE DDREQEITFA
1501 TMAQFPQPVD PEVFTFRPCG PNASFTHATD RRLVAVNRGK EGGQANGFSV CVECGAASVF
1561 DQFSPASGPH ERPYRYLGPQ GTPQLCSGEF RRVLLGHDFT TDLLLVRLKV AAPLVTDTSD
1621 IVTLRMLEDA LHTIAEALRL AASRHRQLDL DPAEFGSGFR VVPVLQNEAR MLDIFLYDTL
1681 SGGAGYAEVA ARNLPDILAD TLVLLENCTC DTSCTECLDH FHNQHIQDRL DRKLGAALLR
1741 YGIFGEEPRC SPPNVQEVTL SQLCASLELE GFRCLPGGMP EAPMLVERGG YRMALGAFPG
1801 LIGRPEFAHA VNSAQNVHGY LALNEYLLRS NLPDSHQRVR SFFR
//