LOCUS ANI10785.1 580 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 amidohydrolase protein.
ACCESSION CP015877-4052
PROTEIN_ID ANI10785.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /locus_tag="A214_20550"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003105792.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKQRIPTLLA GACLAIPLHA LGAADLLVVN ARIFTANPQQ PFAEALAVED GRILAVGDEA
61 GLRALADGDS QIVDLGGKRL MPGLIDTHSH AVFGGLELAG ADMGNEQVGL DELERRLRAW
121 RDNGKARHGD MLNVSGMHTA YWSQVKDFRA RFDHGEWADQ PLAFIGSDHH TGWANAAMLK
181 RAGIDAARVR ALPEEQRNTI GHDADATPNG FLADAGLDAV LAVLPAPSAE QMLEAGRSAV
241 RYSNSLGLTA WMDPAANGSP GDALFSLRPD ENTVGVLPVY QRLAKGGELS AHVAALLVAN
301 PRSRPADLEV LDKVRQRFLG SPNLTLPGIK VFADGVPEYP AQTAALLEPY RNSRKTGELL
361 IDPAHFGELV SAADARGWLV HVHAIGDRAV REALNGMQQA RRDRDSGIAH SITHLQLINP
421 KEFERFRPLG VIASMQLYWA AADETTVDLM KPYISAFAYR YQYPAHSLLS KGATIAGASD
481 WPVSSLSPWK AIQQAVTRKG PQGVLNAGER LDRQTMFYAY TRNAARTIGL EHRIGSLEPG
541 KQADFIVLDR DVFEVPETQL GETKVLKTWF AGKPVYSSEG
//