LOCUS ANI10705.1 667 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 type IV secretion protein
Rhs protein.
ACCESSION CP015877-3969
PROTEIN_ID ANI10705.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /locus_tag="A214_20135"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_017518804.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSRGTDTSSL SLVAELLSDL NLETLAGGER LNTLDSMSLQ GNSSTSLTLS NTVASHLSAT
61 LHNDSQQRPL DALVAEIHQL PADATADRFQ LVLRPWLWWL TLASNNRVFQ NLATSDIVTT
121 IFKAHGFTDF KLSLTGSYEP REYCVQYGET DFAFVSRLLE EEGIFWFFIH EVGKHTLVLA
181 DSNDAFPPIP NGPKVPYLDQ EIGVRELHGI RSAQYCLQAV AGTYSATDYE FTTPSTSLYS
241 QAQAEAGPRA RYEHPGGYTA KGRGDALTKQ RVDGLRSQEK RLIGESDCRW LVPGHWFTLS
301 GHDDDSLNID WVLTSVTHDA SHAHYRNRFE AIPKATAYRP ARVTPKPRMH TQTALVVGKA
361 GEEIWTDQYG RIKLQFPWDR DGKNDETSSC WVRVVLPWSG KGFGMQFVPR IGQEVIVTFI
421 DGDPDRPLVT GCVYNGDNAL PYALPDNQTQ SGIKTNSSKG GGGFNELRFE DKKDAEEVFL
481 QAQKDLNVNV LNDSTASIGH DETLTVQNAR TRTVKEGDET VTLEKGKRTV TIQTGSDSLD
541 VKDTRTVTVG ADQTHSTGGN YSHKVSGDFE LTVDGNLTIK VSGTLALQSG GSLTLKSDAD
601 LAAQAGTSLT SKAGTSLTNQ AGTSLTNKAG TSLTNDAGVS LTNKAGAEQT VDGGGMLTIK
661 GGLVKVN
//