LOCUS       ANI10692.1              1271 aa    PRT              BCT 02-JUN-2016
DEFINITION  Pseudomonas aeruginosa SJTD-1 type VI secretion system
            protein ImpL protein.
ACCESSION   CP015877-3956
PROTEIN_ID  ANI10692.1
SOURCE      Pseudomonas aeruginosa SJTD-1
  ORGANISM  Pseudomonas aeruginosa SJTD-1
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6243825)
  AUTHORS   Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
  TITLE     Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
            bacterium capable of degrading long-chain alkanes and crude oil
  JOURNAL   J. Bacteriol. 194 (17), 4783-4784 (2012)
   PUBMED   22887679
REFERENCE   2  (bases 1 to 6243825)
  AUTHORS   Liang,R., Tao,F., Liu,H. and Liu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2012) State Key Laboratory of Microbial
            Metabolism, School of Life Sciences and Biotechnology, Shanghai
            Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
            China
REFERENCE   3  (bases 1 to 6243825)
  AUTHORS   Liang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2016) State Key Laboratory of Microbial
            Metabolism, School of Life Sciences and Biotechnology, Shanghai
            Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
            China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Source bacteria available from Dr. Rubing Liang (School of Life
            Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
            200240, China).
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: ALLPATH-LG v. 2015; GapCloser v. 2015
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 200x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/25/2016 16:12:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,696
            CDS (total)                       :: 5,617
            Genes (coding)                    :: 5,603
            CDS (coding)                      :: 5,603
            Genes (RNA)                       :: 79
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 7 of 14
            Pseudo Genes (internal stop)      :: 3 of 14
            Pseudo Genes (multiple problems)  :: 1 of 14
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa SJTD-1"
                     /mol_type="genomic DNA"
                     /strain="SJTD-1"
                     /isolation_source="soil"
                     /db_xref="taxon:1193501"
                     /country="China: Shanghai"
     protein         /locus_tag="A214_20070"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003162826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MSGATLFMLV LLLVLLALLL GALGWWWRTR GGTEIRSFYA AVRQMEREQG WQGRYEAPWL
       61 LMLGNETEGE QLCATWRLLP VARPAWFGRW WSDGEGAILL VPESVFLPDE GLRRQSGAWL
      121 RLLRLFLRLR GRRALDGVVW NIPLARLQDG EQAANLGLAA RRRYVELTQR LGLSLPVYVV
      181 ITGLEDLPGF QELLAALPEE ARERALGWSS PFAAEAAWQS RWCEQALEEI TATLTESIVE
      241 LGTLRGQVDN ELYCLPPRLE SLRGSLQALL EPVFQGNARG EAPRFRGLYL SGSEAAGAAA
      301 DDVLPAVDAP RRRSSFASQL WARRILAEEG LAQAVPRILQ LRQRWQRGIG LAALCLCLLW
      361 GGLMTWVWRD ALRDAGELSQ LLHGASERYQ PLDDDTRRAA QVRQNVQAWW QLVSQAPRWR
      421 FTSLAFPSSW FSSLDARIDN AYRRVSECLL VRPLRSLLEG EASDLRAIRS DGQPGLKEGD
      481 DPSQWKDYLA AKDLVARATT LERHNRLFAQ AIDNRRTPLD DLLQLSNDAL GSSYNAGSLA
      541 RLAYYNRMLF AERPADLAAL DLGRVAATAA DNFHDLMARW LNAYFLTDSL ERTGNALTQE
      601 LAQLGQERDA TAAQLLGIGE LINHLQQQVN RINLIWGNGV GQDLVPGYQN LLKSAQQSSL
      661 LGNRVEELQN LTVQLQQQFR SEWIAPPEAA GDGLLVKQGA TLKLADDLLG LKRAIDDLKT
      721 KDFVSVALAD KTLADHSLLS IDDIGVTQAL SFFNDFTGYY ESTLPSLNPR YRYSVLHAAA
      781 SAATEAMWQS LGPRSRSLAS RNASRFDVQV KQVQVLQAAL LELQDLQAGA RLLLSLNALA
      841 VADIGQALRD IDEQAVLREP VDFSRWSGAP NFGLQMFRAQ DSAELKQSLN SQFNAMAAVA
      901 ERHAPALEWL QAQQSSLATA DYNAFVRFSA LNAELQKFKA DNPASTAAQL AKLVGNDFNQ
      961 MDIGSCADIL NGVLLPSSRS DLATRLVDLR QGALGRCQSL QQQQAAQAWK DLADYFNQYL
     1021 AGRFPFAYSL EAADAEPGRV RHLLKLMETR LPQVREGLAQ VRSPDLPAAE DFVRRLEQAQ
     1081 RWLGPLFERD KSGLLGVALD IDWRSDRSLE RGADQVIAWS LYSGDQESRF PGAQDKGLTW
     1141 NVGDPLKIML RWAKNGSQRP ADDPRQASLA VADLEAGWSY QGSWALLRMM RAHFSRQRPP
     1201 NVDYTEFPLV LQLPVYAPYS PENEARMFLR LSLMSLGGKT PLSIQPLPVR APQSPFATLL
     1261 PATVASTGGT P
//