LOCUS ANI10692.1 1271 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 type VI secretion system protein ImpL protein. ACCESSION CP015877-3956 PROTEIN_ID ANI10692.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_20070" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003162826.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSGATLFMLV LLLVLLALLL GALGWWWRTR GGTEIRSFYA AVRQMEREQG WQGRYEAPWL 61 LMLGNETEGE QLCATWRLLP VARPAWFGRW WSDGEGAILL VPESVFLPDE GLRRQSGAWL 121 RLLRLFLRLR GRRALDGVVW NIPLARLQDG EQAANLGLAA RRRYVELTQR LGLSLPVYVV 181 ITGLEDLPGF QELLAALPEE ARERALGWSS PFAAEAAWQS RWCEQALEEI TATLTESIVE 241 LGTLRGQVDN ELYCLPPRLE SLRGSLQALL EPVFQGNARG EAPRFRGLYL SGSEAAGAAA 301 DDVLPAVDAP RRRSSFASQL WARRILAEEG LAQAVPRILQ LRQRWQRGIG LAALCLCLLW 361 GGLMTWVWRD ALRDAGELSQ LLHGASERYQ PLDDDTRRAA QVRQNVQAWW QLVSQAPRWR 421 FTSLAFPSSW FSSLDARIDN AYRRVSECLL VRPLRSLLEG EASDLRAIRS DGQPGLKEGD 481 DPSQWKDYLA AKDLVARATT LERHNRLFAQ AIDNRRTPLD DLLQLSNDAL GSSYNAGSLA 541 RLAYYNRMLF AERPADLAAL DLGRVAATAA DNFHDLMARW LNAYFLTDSL ERTGNALTQE 601 LAQLGQERDA TAAQLLGIGE LINHLQQQVN RINLIWGNGV GQDLVPGYQN LLKSAQQSSL 661 LGNRVEELQN LTVQLQQQFR SEWIAPPEAA GDGLLVKQGA TLKLADDLLG LKRAIDDLKT 721 KDFVSVALAD KTLADHSLLS IDDIGVTQAL SFFNDFTGYY ESTLPSLNPR YRYSVLHAAA 781 SAATEAMWQS LGPRSRSLAS RNASRFDVQV KQVQVLQAAL LELQDLQAGA RLLLSLNALA 841 VADIGQALRD IDEQAVLREP VDFSRWSGAP NFGLQMFRAQ DSAELKQSLN SQFNAMAAVA 901 ERHAPALEWL QAQQSSLATA DYNAFVRFSA LNAELQKFKA DNPASTAAQL AKLVGNDFNQ 961 MDIGSCADIL NGVLLPSSRS DLATRLVDLR QGALGRCQSL QQQQAAQAWK DLADYFNQYL 1021 AGRFPFAYSL EAADAEPGRV RHLLKLMETR LPQVREGLAQ VRSPDLPAAE DFVRRLEQAQ 1081 RWLGPLFERD KSGLLGVALD IDWRSDRSLE RGADQVIAWS LYSGDQESRF PGAQDKGLTW 1141 NVGDPLKIML RWAKNGSQRP ADDPRQASLA VADLEAGWSY QGSWALLRMM RAHFSRQRPP 1201 NVDYTEFPLV LQLPVYAPYS PENEARMFLR LSLMSLGGKT PLSIQPLPVR APQSPFATLL 1261 PATVASTGGT P //