LOCUS ANI10466.1 872 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 fimbrial protein protein.
ACCESSION CP015877-3727
PROTEIN_ID ANI10466.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /locus_tag="A214_18925"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003088865.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTYRHERRCR TGTALMAGGM ALAASAFGHA QPGYEFDDRL LLGSSLGGGD LSRFNQDGRI
61 DPGRYHVDVY LNERFASRSE VSFRTNPASG AVEPCLDEDF LRQRLGAKPG DDPRKSGDGR
121 HCAFLGARLP GSRFSLDVAR LRLDLSVPQA LLDLKPRGYV SPEEWDAGDS MGFVNYDTNL
181 YRSEYRGGES GRSDYAYVGL NSGINLGLWR LRHQSNYTYS RYNGQARRKW NSIRTYAQRA
241 LPAWRSELTA GESYTAGNLL GSIGYRGLSL ATDDRMLPES LRRYAPQVRG TAATAARVVI
301 SQNGRKIREV NVAPGPFVID DLYDSAYAGD LDVQVFEADG SVSSFSVPFA SVPESMRPGL
361 SRYSFTLGQA RQYGDGDDLF ADFTYLRGMS NALTANLGLR VADDYLAMLG GGVLATRFGA
421 FGLNSTYSSA RVEDGARKQG WRIGLDYSRT FQPTGTTLTL AGYRYSTEGY RELGDVLGSR
481 DALRHGDTWD SGSYKQRNQF NLLVSQALGG YGNLYLSGSS SDFYDGKSRD TQLQFGYSNT
541 WGQLSYNLAW SRQTTTYYQE QGDQDPGVEL LRRDRRSGQR NDTLTLSVSM PLGSSSRAPT
601 LSAMATRRSG DSRGGSLQTG LNGTLGDERT WSYALSANRD SEVADTTWNG TLQKQAALAT
661 VNAGYAQGDR YRQYSGGIRG ALVAHRDGLT LGPSVGDTFA LVEAKGASGA AIRGGQGARI
721 DGNGYALAPS LSPYRYNPIS LDPVGIDPDA ELLETERKVA PYAGASVRVT FRTLTGHPLL
781 IQARREDGSV LPLGAVVVDD GGAAIGMVGQ GGQVYARAEN QRGRLLVQWG TARKERCELP
841 YDLAGVSRDQ ALIRLRGTCR AATTDSNLEN AR
//