LOCUS ANI10149.1 621 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 peptidylprolyl isomerase protein. ACCESSION CP015877-3397 PROTEIN_ID ANI10149.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_17275" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_016493553.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLQNIRDNSQ GWIAKTIIGV IIVLLSLTGF DAIIRATDHS NVAAKVNGDD ISLNEVQQAV 61 DMQRRQLLQR LGKDFDPSML DDKLLKEAAL KGLIERTLLL QAAKDDKFAF SDQALDQLIL 121 QTPEFQVDGK FNADRFDQVI RQMNYSRMQF RQMLGQEMLI GQLRAGLAGT GFVTDNELQS 181 FARLEKQTRD FATLAIKADA SKSSVSEDEV KAFYEGHKSE FMTPEQVVVE YVELKKSSFF 241 DQVKVKQEDL EALYQKEIAN LSEQRDAAHI LIEVNDKVGD EQAKAKIDEI KARLAKGEDF 301 AALAKEFSQD IGSAATGGDL GYAGRGVYDP AFEEALYALK QGEVSAPVKT PYGYHLIKLL 361 GVQAPEVPSL ESLKPKLEDE LKKQMVEQRF VEATKDLESS AYEAADLSQP AQEMGLKVQT 421 SQPFGRSGGD GIAANRQIVQ TAFSPEVLEE AANSGAIELD PDTVVVLRVK EHNKPKEQPL 481 EQVAANIRER LAAEKAAEEA QKRGEALIAE LREGRTSSAA GESWKVVEAA SRGQEGVDPK 541 LLQAVFRMQR PEAKDKPSLS GVTLANGDYV VIRLNGVSEP EEAISDDEKA MYRRFLASRS 601 GQADFAAFRR QLQDKAEVEK Y //