LOCUS ANI10131.1 869 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase protein. ACCESSION CP015877-3378 PROTEIN_ID ANI10131.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_17145" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003087875.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLEAYRKHVE ERAAQGVVPQ PLNAEQTAGL VELLKNPPAG EEEFLLDLIT NRVPPGVDEA 61 AYVKAGFLSA IVKGEATSPL IDKQRAAELL GTMQGGYNIA TLVELLDDAE LANTAAEQLK 121 HTLLMFDAFH DVAERAKKGN AAAKSVLQSW ADGEWFKAKP EVPEKLTLTV FKVPGETNTD 181 DLSPAPDAWS RPDIPLHALA MLKMARDGIE PVQPGSVGPL KQIEAVKAKG FPVAYVGDVV 241 GTGSSRKSAT NSVLWFFGDD IPFVPNKRAG GFCFGTKIAP IFYNTMEDAG ALPIEFDCTN 301 LAMGDVIDVY PYEGKVVRHD SGEVVTTFEL KTPVLLDEVR AGGRIPLIVG RGLTEKARAE 361 LGLGASDLFR KPEAPADSGK GFTLAQKMVG RACGLPEGQG VRPGTYCEPK MTTVGSQDTT 421 GPMTRDELKD LACLGFSADL VMQSFCHTAA YPKPIDVKTH HTLPDFIMTR GGVSLRPGDG 481 IIHSWLNRML LPDTVGTGGD SHTRFPIGIS FPAGSGLVAF AAATGVMPLD MPESVLVRFK 541 GKLQPGITLR DLVHAIPYYA IQQGLLTVEK KGKKNIFSGR ILEIEGLNDL TVEQAFELSD 601 ASAERSAAGC TIKLPEQAIA EYLKSNITLL RWMIGEGYGD PRTLERRAQA MEAWLAKPEL 661 LEADKDAEYA AVIEIDLADV KEPVLCAPND PDDARLLSSV QGRKIDEVFI GSCMTNIGHF 721 RAAGKLLDKV KGGIPTRLWL APPTKMDAHQ LTEEGYYGIY GKAGARMEMP GCSLCMGNQA 781 RVQTGSTVVS TSTRNFPNRL GDATDVFLAS AELAAVSSIL GKLPTVEEYM AYAKDIDSMA 841 ADVYRYLSFD QIAEFREAAA NAKIPVVQA //