LOCUS ANI10104.1 901 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 helix-turn-helix transcriptional regulator protein. ACCESSION CP015877-3349 PROTEIN_ID ANI10104.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_17000" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003120314.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MDAVQNPAAG SLSRSRIVPP QVPAEYSLRP AIRNLLDRNP HSRVLMFSAP AGFGKTCALA 61 ALARERTVAD QAVAWLSLAE EDDDPARFCR QLIEALGEAV PQLGDDAQTY LQNTMRVPVV 121 AVIESLLGDL DRYARPLLLV LDDLHLVSNP DIFTGLNRLV QYAPPGLVLA LGTRSQPALS 181 LATWRAKGLL LEIGLEELRL GFEETREYLE RSGLYLDEPC LKALYGQTEG WVVGVHLVSL 241 WLRQQPQAQE MALLDGDKQA VSAYLLAAVF ERLPGDLQEA LLALGVASQL SGDLANALTG 301 RQDGQALLER LESMQLFLLP LDRERQWYRF HLLFADFLRN RLRDSDPDRF KQLHFNASLW 361 FTNHHMPTFA IEHACAAEDP EMIAALVDGC GLELINRGQL SLIYRWRKHV PDEIAERYPI 421 LVLTDVWSRA SDLSLGEANR IIDELLARWG ESRGDGPMGD QYLSALAVKA VVALQKDDLE 481 LCIALARRVE VQLGQNAAFL EVAVLITAAL AQVVRGQGDQ ARRLLGLAQQ RNHFLEGRYL 541 DMQLANVEVI LALEQGQVKQ AQLLIERLRQ RARPLFEKSR SALALPTITE ALTAYYRIEL 601 DGLEERLGWA LGHVDVINPI DFYAQGQICL ARTQRLLGRP KEALASLAAM QALASRNQSW 661 RFFAQAMAEE INLILQDSGP DRLKRAEQRL KSVDWNKMAA HYRNMAFNPV NWSLGVSRVR 721 LLQGRGHFSE ALHEITQLRG TLQPGWHGLQ RLRLDILAAL SYQRLGYQER ANSLLGECLI 781 NAEREGVRSL FIEEGDGIRQ LLQQLESTER QPALQTFIRG LLGIWPGQGV RKPQDALEEG 841 LTEREREVVC LAAQGLSNEE IGQRLSLALG TVKWHLHNIY EKLKVRNRTQ AIRRARELSL 901 L //