LOCUS ANI10071.1 685 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 hypothetical protein protein. ACCESSION CP015877-3316 PROTEIN_ID ANI10071.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_16835" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_019396579.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MLISSYNQVL VAFSLIVAIL ASYTALDMAG RVTLAKGREA LSWLIGGAFA MGFGIWSMHF 61 VGMLAFSLPI PLGYDLGLTL LSLLLAVGSS AFALWLVCQA ELPWQRLALG ALLMGSGIAA 121 MHYTGMAALL MMPGIVYDPL WLGLSILIAV IASGAALWIA FRLRHGSRRI VLVRAGAALV 181 MGCAIVGMHY TGMAAAQFPL GSFCGAAGRG IDNGWLAVLV IVITLAVIAI ALIVSVLDSR 241 LEARTSVLAT SLARANRELI QLALHDNLTK LPNRMLLDDR LEQAIQQAIR DDRRFAVLFM 301 DLDGFKAVND AYGHHLGDLL LIEVAERIRA NVRAQDTIAR LGGDEFVLLI EAREPADAAT 361 LAEKLVKRIS QPYQISRHEV RISASIGIAL YPGDGQTRHE LMINADAAMY HAKDQGRNGY 421 CFFESSMNAN AQEQLQLLHD LRQALERRQL VLHYQPKVLA PNGPMIGVEA LLRWEHPQHG 481 LITPGQFLPL AEKTGLIVQI GEWVLDEACR QMRLWLDGGH ADWNIAVNLS ALQFAHAGLV 541 DSVRNALLRH SLEPSHLILE VTESTAMRDA DASLVILEQL SAMGVGISID DFGTGYSSLL 601 YLKRLPASEL KIDRGFINEL AHDSDDAAIV SAIVALGRTL NLKIVAEGVE TEAQQEFLTR 661 LGCNSLQGFL LGRPMPAEQL LASVA //