LOCUS ANI09955.1 702 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 TonB-dependent receptor protein. ACCESSION CP015877-3199 PROTEIN_ID ANI09955.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_16250" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003122892.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MPIASRAPAS LTLLALLFGG KLAAADLFND PSGVPEVLTA TRLKQSPAEV PGSISVLDRE 61 LIVASGARDI PELMRLVPGM MVGYLSGNQP TVNYHGTSMS GARRLQVLID GRSVYRPGLA 121 SVDWSDLPLA LEDVERIEVF RGPNTVSYGA NALMGVINII TRAPGESPGT RLKYTAGQRG 181 IRDWYASQSI ALEDSDFRLS LSGQEDDGFD RDHDGHALRD GRRLSRFNLN ASHSLAPNQS 241 LEWQLAAKEG SNQHPYAYRS PFPQVPDDID NSDTLAHDYA GSLRWNVDLD PRHSFYIQGY 301 AQHWERRQEW NACEAGIAFS PQLAQLWELN PDYLRRFADD PTRLPPGSAQ ELQLATQVLD 361 QLRNGGLRPV CGRVDRNIRE SRYDLEMQDT LSLGDNLRLL NGLSYRYDQA NSETFYGGRV 421 SSQIWRLFSQ LEWHAGEHWL LQGGGMLEDV EGSGSSFSPR LAVNYLFNPQ HSLRAVYSEA 481 VRSPGMYEND VDWRYRVRHL TPAPYGQSEA YYFASAHGPG DLGKEHTRSR EIGYNGFFRE 541 TGLAVDVRLF HEEITGLISD PLSVVDFSPD NGDRIRFSGA EGQLDWRLGL RDRLRATYAY 601 LDYDATSRYD RRLTARHGGS AGWMHDWGQG WSSALFYYGD DSLNGHRFER VDLRLAKRIP 661 LGKAALELAG VLQQRLDDQP LTFPDNRYDS RHLLYFSAEV TF //