LOCUS ANI09636.1 612 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 TonB-dependent vitamin B12
receptor protein.
ACCESSION CP015877-2871
PROTEIN_ID ANI09636.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /locus_tag="A214_14605"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003112350.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MNRVFLTPAA VALCGASSLS LAEPVSLADQ VVTATRTAQT ASQSLAAVSV IDREDIERSQ
61 ARSVPELLRQ VPGVSLANNG GFGKNTTLFL RGTESDHVLV LIDGIKVGSA SAGLTAFQDL
121 PVELIERIEV VRGPRSSLYG SEAIGGVIQI FTRRGDGQGA KPFFSAGYGT HQTLEGSAGV
181 SGGAGNGWYS LGVSSFDTAG INTKRAGTAG YEPDRDGYRN LSGNLRGGYR FDNGLELDGT
241 LLRAKSHNDY DQVFGNSGFN ANADGEQNLV GGRARFTPFD PWLVTLQAGR SEDKADAYQD
301 GRFYSRFDTR RDSLSWQNDL TLAEGHVLTL GYDWQKDEIS SSEAFSVDSR LNKGWFAQYL
361 GRYGRQDWQL SLRRDDNQQF GVHDTGSAAW GYALSDALRF TVSYGTAFKA PTFNELYLPD
421 YGNPDLDAET SRSLEVGLSG THDWGHWAVN AYRTDIDSLI TYTTRQGLYV PFNIDEARIR
481 GVELVLGSQW LGWDWNANAT FLDPQNRSGG VNDGNELPRR AQRMFNLELD RRFERLSLGA
541 SVHAEGRRYD DPANEVRLGG YATLDLRSEY RLNDEWRLQG RIANLFGADY ETAYGYNQPG
601 QAVYLSVRYQ AL
//