LOCUS ANI09483.1 588 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 ABC transporter ATP-binding
protein protein.
ACCESSION CP015877-2714
PROTEIN_ID ANI09483.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /locus_tag="A214_13820"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003120592.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MPAILSSRQR IALRLAWRFM APYRWRMLGA LVALLFTAAI TLSLGQGIRL LVDQGFLTAS
61 PELLNRYILL FFVLVLGLAV GTFVRFYLVS WIGERFVADI RKRVFDHLIE LHPGFYETNR
121 SSEIQSRLTA DTTLLQTVIG SSLSMALRNA LMLVGGVLLM FVTNAKLTSI VVLALPLVIA
181 PILLFGRRVR SLSRESQDRV ADVGSYVGET LGQIKTVQAY NHQAQDRQRF AGTVERAFDT
241 ARKRIAQRAW LITVVIVLVL GAVGVMLWVG GRDVIAGSIS AGELAAFVFY SLIVGMAFGT
301 LSEVIGELQR AAGAAERIAE LLRARSEIRP PAQPRKLAAR VSGRIELQAV RFAYPTRPEH
361 WAIDDISLAV EPGETLALVG PSGAGKSTLF DLLLRFFDPQ QGRLLLDGQP IVELDPADLR
421 RSFALVSQNP ALFFGSVEEN IRYGRPHASA AEVEAAARAA HAHEFILGLP QGYATHLGEG
481 GIGLSGGQRQ RLAIARALLV DAPVLLLDEA TSALDAESEH LIQQALPGLM SGRTTLVIAH
541 RLATVQSADR IAVIDQGRLV AIGSHARLIA ENPLYARLAE LQFAAGGR
//