LOCUS ANI09239.1 818 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 PAS domain S-box protein protein.
ACCESSION CP015877-2463
PROTEIN_ID ANI09239.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /locus_tag="A214_12535"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_019727159.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MRQNRTLDKP RLLGLVWPFI VVVLLQAMLA GGSLYVLSAV RSYVGGESLW SKGQKDAIYY
61 LTLYADSRAD EDFRRYEEAI AIPLGDREMR LALDQPDPDI EAARQGILKG GNHADDVTAI
121 IWLYRNFHDF SYFERAIELW LVGDKYVMEL IDVAGKMRAG IGAGQASAEQ VQQWKTEIHA
181 INEKVTPAAK AFSDALGEGS RALLRLLLVA NLTTASVLIL LAFLRTRQQL MQRQEVENAL
241 DAERERAQIT LASIGDGVIT ADTQGGISYL NPAAEQMTNW TLDKARGLPL ASLFRIVDES
301 SREEGMLLIE QILSGEIDGG REHSKLVLRH DGSSVPVTLV GAPIHRGAEI TGVVLVLHDM
361 TRERQYMARL SWQATHDALT GLTNRREFEY RLQIALERLE RNSGRHALMF LDLDQFKLVN
421 DTCGHAAGDE LLRQVCTLLQ QGLREGDTLA RLGGDEFGIL LENCPAEKAV EIADHLRKTI
481 QDLHFTWSGQ PFNCTVSVGL VHLLPGISTL EEALRSADMA CYMAKEKGRN RVQVFHQDDV
541 ELSMRFGEMT WVQRIHLALE EDRFSLYAQP IVPLGEGAEE GLHVELLLRL RDEGGRLVPP
601 LSFIPAAERY GLMTLIDRWV VENAFRTLVE RAQDPRAEPI GTCAINLSGA TIGDESFLQF
661 LTELFARYRI PPQTICFEVT ETVAVANLAS AIRFINELKD TGCRFSLDDF CAGMSSFIYL
721 KHLPVDYLKI DGSFVKDMLE DPIDRAMVQV INHIGHVMGK RTIAEFVETV EVMEALREIG
781 IDYAQGLAIG APLPFSRQPP GAGVDAQGLW PSLGQNLR
//