LOCUS ANI09164.1 471 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 amino acid permease protein. ACCESSION CP015877-2383 PROTEIN_ID ANI09164.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_12130" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003085613.1" /note="involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSSVGEQKVQ DGSLKRELGE RHIRLMALGA CIGVGLFLGS AKAIQMAGPA IMISYILGGL 61 AILVIMRALG EMAVHNPVAG SFSQYAKDYL GPLAGFITGW NYWFLWLVTC VAEITAVAVY 121 MGIWFPDVPR WIWALAALAS MGTINLIAVR AFGEFEFWFA LIKIVTILAM VVVGIGMIAF 181 GFGNDGIATG ISNLWAHGGF MPNGIQGVLM SLQMVMFAYL GVEMIGLTAG EARNPTKTIP 241 SAINSVFWRI LLFYVGSLFV IMSLYPWNEI GTQGSPFVMT FERMGIKTAA GIINFVVITA 301 ALSSCNGGIF STGRMLYSLA QHRQAPAFFG KASRSGVPRR ALILSILALL LGVLLNYLVP 361 EKVFVWVTSI ATFGAIWTWA MILLAQLRFR KTLSPAECDK LQYRMWLYPV SSYLALAFLV 421 MVVVLMAFFE DTRIALYIGP PFILLLTVLY YAFNLAPKEP SGTGSVSRAA S //