LOCUS ANI09155.1 687 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 TonB-dependent receptor protein. ACCESSION CP015877-2374 PROTEIN_ID ANI09155.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_12085" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003120776.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSSSGLFPSR PLWPLTPLAL ACLIVSGETL GADGRPSELP SQVITANPLG NESPATPSSV 61 LEGDELTLRQ KGSLGETLNG LPGVSSTYFG PGASRPVIRG MDGDRIRLLR NGVGALDASS 121 LSYDHAVPED PNSVERLEVV RGPAALLYGG NAIGGVVNSF DNRIPSEPVD GIHGSGELRY 181 GGADTTRSRS GALEAGDGNF ALHVDAASRE FNDVRIPGYA HSSRQRQIDG DTGKHRVQNS 241 DGRQDGGAVG GSYHWEHGYA GLSYSGYDSN YGSPAEDDVR LKMQQDRYAF ASEIRDLEGP 301 FTSLKLDAAY TKYEHKEIED GETGTTFKNE GYEGRIEARH RPLGPLNGVV GAQFANSRFS 361 ALGEEAFVPH TETDSAALFA LEEWKLSDRL DLSFGARLEH TRVDPDAKGN ERFAENDGSQ 421 SFTTGSLSTG AVYKLTPIWS LAATLSYTER APTFYELYAN GPHAATGTYE VGDADADKEK 481 AVSTDLALRF DNGVHKGSVG VFYSRFSNYI GLLASGRHRN EEGEVVAAGD DEALPEYLYS 541 GVRADFYGVE AQDRIHLLES PYGNFDLELS GDYTRAKNKD TGEPLPRIAP LRLNTALIWE 601 LQQWQARVDV EHAASQHRVP EEELSTDGYT TLGASLGYNF DLGESRWLAF VKGTNLTNQT 661 VRYASSILRD RVPAAGRGIE AGVKVAF //