LOCUS ANI09075.1 469 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 type II secretion system protein GspE protein. ACCESSION CP015877-2289 PROTEIN_ID ANI09075.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_11655" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_017906462.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSLLPYAWAK AQRALLRPGE HGATLLVSPR TPGWAISEVR QRHAPASLES VRDDELDTLL 61 ASAYSDTGSA AAVVGAAESE VDLDRLMDDI PEVTDLLDTQ DGAPVIRMIN ALLTQAARDE 121 ASDIHIEPFE THSVVRYRVD GALRDVVAPR KALHAALVSR IKIMAQLDIA EKRLPQDGRI 181 ALRVAGRPID IRVSTVPTGH GERVVMRLLD KQAGRLRLET LGMAPGVLAP LDNLIRQPHG 241 IVLVTGPTGS GKTTTLYAAL ARLDASTSNI LTVEDPVEYD LPGISQIQVN ARIDMTFAVA 301 LRAILRQDPD IIMIGEIRDL ETAQIAVQAS LTGHLVLATL HTNDAVSAVT RLVDMGVEPF 361 LLASSMLGVL AQRLVRRLCT HCRVEEDGGW RAVGCPACNQ TGYSGRTGIH ELFVIDDEIR 421 RLVHQGRAEQ DLREAARAAG MRSMREDGER WIASGSTTLE EILRVTRDA //