LOCUS ANI09045.1 923 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 PAS domain-containing sensor histidine kinase protein. ACCESSION CP015877-2258 PROTEIN_ID ANI09045.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_11475" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003115766.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MFEFSRSSSA EAERPEPFSQ EGPALWSASL RSWDLCFEMD EQDRVIRVGG RQAYRLQCAH 61 GLGEQPRPFA EYLERRAPGA PTLAGLRRGE RLDLTLRSDA AAPLTCRFQP MQPLDGLGRS 121 LLLGMDISDL NWQSDNQQHQ LQSLSLGKLI LSRLRHVSHG HLAEAVQEIL ESLSGAFQMQ 181 AIALLLGDGK GFCTVFASHV RPGSDSLLRP TLQLADDDLR EGAGARLLRR GEGASTLLRQ 241 IGEDALYLVP AAMRGGRLGA LLVRPMSLEQ LAQGPAPQDW QYLAELLANQ VADRCELHEQ 301 HDSSRKLGLL QEMIGGGWWR YWAEQELFEL APALHDSLGL TGEYRRVPLE HLQGLLQPAD 361 ADEFGLRLRA SLRSGQALAQ DLCLRQPDSR GERRWLRIEG RPLGRGSALG LSGVLLDISE 421 GRRQEERAQA AHARLRSLID SAPVVIYVQR VEQGHLVPEF YSESASNLLG LDLQGQSWQA 481 LAERVHPDDL EAFFARGREL LREGRVKTRY RLADGQGNWH WLYDEAKLLR DAQGLPSEAV 541 GLWLDVTEQH LAAQRIAESE ERYRVLVEDS PALICRYTAD LVLTYVNRTF ADSLATSPER 601 LVGRRLDEWL AAEDASALRA RLLGSPREGA SEVPELRFNL PGQRFLWLVW AERPLFDARG 661 ELCEVQAVGR DNTPVRRAQQ QLAQGAKMAS LGEMVSGLAH EVKQPLHVLR MTLFNMRQRM 721 NSVGLDGDYL GEKLERMDAQ VLRVDRLVSH LGVFSRKSAL EALPFDPYTA FEGALGLLGE 781 GLRQHAIEVE CPAPTQRMVV RGQADQLEQV IINLLANARD ALLGNLGLAS RRIRLEQVAC 841 REPGWVELHV HDNGGGIEPL LLERIFEPFF TTKVEGKGTG LGLSVSHDLV RNMGGSLTAA 901 NQGEGALFVV RLPLAALPAE AGG //