LOCUS ANI08970.1 687 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 diguanylate cyclase protein. ACCESSION CP015877-2182 PROTEIN_ID ANI08970.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_11095" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003094007.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MKLDSRHSLS LKLLRVVLLA ALAVGVVLSC AQIVFDAYKA KQAVSSDAQR ILAMVRDPST 61 QAVYSLDREM AMQVLEGLFQ HEAVRQASIG HPGEPMLAEK SRPLLDLPTR WLTDPILGQE 121 RTFSIRLIGR PPYSEYYGDL KITLDTAPYG ENFVTTSEII FISGILRALA MGLVLFLVYH 181 WMLTKPLSKI IEHLVSINPD RPSQHQLPLL KGHERNELGL WVTTANQLLA SIESNSHLRR 241 EAEDNLLRIS QYDFLTGLPN RQLLQQQLDQ ILDGAGRQQR RVAVLCLGLD DFKGINEQYT 301 YQLGDQLLIA LADRLRGHSA RLGSLARLGG DQFALVQADI EQPYEAAELA QSILDGLEAP 361 FEIDQHEVRL RATIGITLFP EDGETTEKLL QKAEQTMTLA KTRSRNRYQF YIASVDSEMR 421 RRRELEKDLR DALQRHELHL VYQPQVDYRD HRVVGVEALL RWQHPLHGFV PPDLFIPLAE 481 QNGSIFSIGE WVLDQACRQL REWHDQGFDD LRMAVNLSTV QLHHNALPRV VSNLLQVYRL 541 PARSLELEVT ETGLMEDIST AAQHLLSLRR AGALIAIDDF GTGYSSLSYL KSLPLDKIKI 601 DKSFVQDLLQ DEDDATIVRA IIQLGKSLGM QVIAEGVETA EQEAYIIAEG CNEGQGYLYS 661 KPLPARELTQ YLKQARRLSQ ATSSERP //