LOCUS ANI08782.1 943 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 isoleucine--tRNA ligase protein. ACCESSION CP015877-1988 PROTEIN_ID ANI08782.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_10100" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_017521616.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTDYKATLNL PETAFPMKAG LPQREPETLK FWNDIGLYQK LRAIGGDRPK FVLHDGPPYA 61 NGSIHIGHAV NKILKDIIVR SKTLAGYDAP YVPGWDCHGL PIEHKVETTH GKNLPADKTR 121 ELCREYAAEQ IEGQKADFIR LGVLGEWDNP YKTMNFANEA NEIRALAEMV KQDFVFKGLK 181 PVNWCFDCGS ALAEAEVEYA DKKSPTIDVG FPVADADKLA AAFGLAALDK PAQIVIWTTT 241 PWTIPANQAL NVHPEIDYAL VDAGDRYLVL AEALVESCLA RYQREGKVVA TAKGEALELI 301 NFRHPFYERL SPVYLADYVA LDAGTGIVHS SPAYGEDDFY TCKRYGMSND DILSPVQSNG 361 VYVDSLPFFG GQFIWKANPN VVAKLEEVGS LLAHETINHS YMHCWRHKTP LIYRATAQWF 421 VGMDKQPRQG ASLRERALEA ITQTEFVPGW GQARLHGMIA GRPDWCISRQ RNWGVPIPFF 481 LHKASGELHP RTVELMEEVA QRVEKEGIEA WFKLDAAELL GEEAAQYEKI NDTLDVWFDS 541 GTTHWHVLRG SHRIGHASGP VADLYLEGSD QHRGWFHSSL LTGCAIDNHA PYRQLLTHGF 601 TVDESGRKMS KSLGNTVVPQ TVIDTLGADI LRLWVASTDY SGEIAVSQQI LQRSADAYRR 661 IRNTTRFLLS NLNGFDPATD LLPPQEMLAL DRWAVDRALL LQREIEEAYR EYRFWNVYSK 721 VHNFCVQELG GFYLDIIKDR QYTTGANSVA RRSCQTALFH IAEALVRWIA PILAFTAEEV 781 WKFLPGERAE SVMLATWYDG LSELPADVTL NRQYWEQVMA VKAAVNKELE NQRAAKAVGG 841 NLQAEVTLYA EDALQAQLAK LGNELRFVLI TSTATLAPLS AAPADAVDSE VAGLKLKVVK 901 STHAKCGRCW HHREDVGQHA AHPDLCGRCI ENIEGSGEVR HYA //