LOCUS ANI08427.1 989 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 TonB-dependent receptor protein. ACCESSION CP015877-1627 PROTEIN_ID ANI08427.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_08240" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003112301.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MPGANPASEE VMSLQRPIPS LARPLSRLSP LTLALRWALL GLSAAGAGLL GGGLAHAQSV 61 GQHSAATRLD DATPRSYDIP AGSLGASLGA FASQSGLLLS FDPELTRGRT APALKGRYSV 121 LEGLQRVLSN TGLQVAAGTS GAYLLVEPRM SGETPADLSP VVVSAAELAD PQKETYTAPR 181 SSVYLSSEDI DRFGRVSVGD LLQGIPGVQV GDSRNGGALD VNIRGIQGQS RVAVRVDGAE 241 QALDVYRGYA GTQQRSYIDP DLVSSVTVDK GPSTRSGAIG GSVEMRTIGV KDILVDGKDL 301 GVRFTGDVWN NGVAPQHRSA SSKTENLSSV PHDDRGSLFG SQAKSGSAAF AYRNEHLDLV 361 AAYAQRNQGN YFSGKKGQDR YRVYNRYGRE ESSVAKVYNA GEEVLNSSSE TESYLLKATW 421 RIADEHTLDL GYRRYDGRTG EIMPSDIFRF GTAGIYQYPL SEVKIDTYTA RYRYLPENNP 481 LVDLSTGLWM TDAKSDMLTS VLAPRSQAYR SDRNWTRQDN RRIGGDLNNV ARFETDFGDF 541 KLDLGGSFQV EDIQPQKSVV TTLHDINANR TLRDATRQEY GLNGKLEFKP VERLTLWGGG 601 RYSHFNSKDN GISASPRRED RDMRFITVSR PGYYGSMMWF PDQNGQYTDA TDPRLNNGIV 661 TNNTNNPFEG IPFDEFGPAN VTVHPSRVTN VVTGYNYSKK GSSRGGGFSP AFRINFELAP 721 DTFVYASYTE GLRLPSLFET SQGTLQVEPG KDLKPERSRS WEIGASALRD SLLADGDSAA 781 IKLAYFNNTI KNYITRYYDP GQMGLMTFSN TDSYRTSGLE LQSHYDAGRV FADLSATYYL 841 KTETCDAAFA ARLRAGANRY QRTENTPNCT PGSFMGSYTN TQNPPRLATN LTAGLRFFDQ 901 ALTLGGRMTY TSGPTATADK PWQVGATTPQ IEYRSVQLFD LFLKYKLFEH TELNASLQNL 961 TDRYYLDPLA QSFMPAPGRT LRVGMQAKF //