LOCUS ANI08269.1 560 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 class II poly(R)-hydroxyalkanoic acid synthase protein. ACCESSION CP015877-1464 PROTEIN_ID ANI08269.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_07415" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_016495137.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MREKQESGSV PVPAEFMSAQ SAIVGLRGKD LLTTVRSLAV HGLRQPLHSA RHLVAFGGQL 61 GKVLLGDTLH QPNPQDARFQ DPSWRLNPFY RRTLQAYLAW QKQLLAWIDE SNLDCDDRAR 121 ARFLVALLSD AVAPSNSLIN PLAVKELFNT GGISLLNGVR HLLEDLVHNG GMPSQVNKTA 181 FEIGRNLATT QGAVVFRNEV LELIQYKPLG ERQYAKPLLI VPPQINKYYI FDLSPEKSFV 241 QYALKNNLQV FVISWRNPDA QHREWGLSTY VEALDQAIEV SREITGSRSV NLAGACAGGL 301 TVAALLGHLQ VRRQLRKVSS VTYLVSLLDS QMESPAMLFA DEQTLESSKR RSYQHGVLDG 361 RDMAKVFAWM RPNDLIWNYW VNNYLLGRQP PAFDILYWNN DNTRLPAAFH GELLDLFKHN 421 PLTRPGALEV SGTAVDLGKV AIDSFHVAGI TDHITPWDAV YRSALLLGGQ RRFILSNSGH 481 IQSILNPPGN PKACYFENDK LSSDPRAWYY DAKREEGSWW PVWLGWLQER SGELGNPDFN 541 LGSAAHPPLE AAPGTYVHIR //