LOCUS ANI08216.1 1201 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 hypothetical protein protein. ACCESSION CP015877-1409 PROTEIN_ID ANI08216.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_07140" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003162192.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MQWIFMLVGL ILGGFAGESL VGALLGGLSG LALGQAVSLQ NLAQQNERLR KQMSEFAERF 61 ERGTEVIHQR LLRVERQAQD LPESVPEPAA GIDQPLADTP PAPPAEVAPP LDWDIELPAV 121 EAAPPPPRPP EPVQPIERQP AFQPDAQPAP RRAAPPASPR EPSLVERGFA AAKGWLFGGN 181 TVLRIGVVLL FIGLAFLLRY ASERVAVPVE YRYAGVALAA MALLGVGWWL RERRAAYGLI 241 LQGTGIAVLY LTIFAAMRLH PLISPGAALA LLVVVTICSA ILAVLQNAMG LAVVAALGGF 301 AAPILTSTGS GNHVALFSYF ALLNAGIFAI AWFRAWRPLN LVGFVGTFGI GFAWGLRSYT 361 PELFASTEPF LALFFLMYVG IGLLFARRKL LEAAQAPAER GELLCWSARQ ADYIDATVLF 421 GPPLVGFGLQ CAVIGHIDFG MAFSALALGL FYMVLARVLR GHASAGRTSL LVEICLALGV 481 VFGTLAIPLG LDARWTSAAW AVEGAGIYWL GLHQQRRLAR LFALLLQGGA ALAYLNGVRP 541 GETTLLEGSP LGALMLGAAA LFSFWQLRRA PAKALADWEP ACRPLLAAAG LAFLYLVAPL 601 CLAVDSTAIA WAVAGLASLF AGLRLGSRTF LFCAFAVQLL GGALFLLHLQ GGDGQGGVFD 661 SGWRGLMTAS LIGLALIGGM LLAARDPLVK DDSRLLMGLS LVLLAGLAFV NLAVLFVLPW 721 RNASAVWAGS GLLIIWLSLV LRQRLSFYFG LALQVVGGLA FLLAGPSLFG SLSGEGLRPL 781 AHSGFWTPAV LALAALVGAW RLRRAGERER ALGIGTLGLA ELSHLLLLWG AGWWALTALC 841 ETVRFVPYGL REHALLLVAA ATVASWMLLA LRERWRELAL LCLALVPVAL LALASAWRFD 901 YQPFGEFGWL AWPLLFATHL LSLRRLAPLL PAKALSVAHV LGCWLLLGVL ALELRYLFAL 961 LAEQYNAWRW LGWALVPSAY LLLVAGGRSL PWPLRDFPRE YRLLAAAPVA LLLLGWFWSA 1021 NLLSDGAAEP LPYLPLANPL ELGLLIVLFA LYRWSDASLA SLVDGNASAR LGRQALAGAS 1081 LFALLTLAVC RAAHHLAGVP FQAEALTASM LVQAGLSLVW TLCALGLTIA GTRLGRRDLW 1141 MVGAALVGVV VVKLFFVELG NSGSLERIIS FIGVGVLLLV VGYFSPLPPR RAEVASEAEQ 1201 P //