LOCUS       ANI08216.1              1201 aa    PRT              BCT 02-JUN-2016
DEFINITION  Pseudomonas aeruginosa SJTD-1 hypothetical protein protein.
ACCESSION   CP015877-1409
PROTEIN_ID  ANI08216.1
SOURCE      Pseudomonas aeruginosa SJTD-1
  ORGANISM  Pseudomonas aeruginosa SJTD-1
            Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
            Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6243825)
  AUTHORS   Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
  TITLE     Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
            bacterium capable of degrading long-chain alkanes and crude oil
  JOURNAL   J. Bacteriol. 194 (17), 4783-4784 (2012)
   PUBMED   22887679
REFERENCE   2  (bases 1 to 6243825)
  AUTHORS   Liang,R., Tao,F., Liu,H. and Liu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2012) State Key Laboratory of Microbial
            Metabolism, School of Life Sciences and Biotechnology, Shanghai
            Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
            China
REFERENCE   3  (bases 1 to 6243825)
  AUTHORS   Liang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2016) State Key Laboratory of Microbial
            Metabolism, School of Life Sciences and Biotechnology, Shanghai
            Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
            China
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Source bacteria available from Dr. Rubing Liang (School of Life
            Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
            200240, China).
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: ALLPATH-LG v. 2015; GapCloser v. 2015
            Reference-guided Assembly :: NC_002516.2
            Genome Coverage           :: 200x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/25/2016 16:12:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,696
            CDS (total)                       :: 5,617
            Genes (coding)                    :: 5,603
            CDS (coding)                      :: 5,603
            Genes (RNA)                       :: 79
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 7 of 14
            Pseudo Genes (internal stop)      :: 3 of 14
            Pseudo Genes (multiple problems)  :: 1 of 14
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Pseudomonas aeruginosa SJTD-1"
                     /mol_type="genomic DNA"
                     /strain="SJTD-1"
                     /isolation_source="soil"
                     /db_xref="taxon:1193501"
                     /country="China: Shanghai"
     protein         /locus_tag="A214_07140"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003162192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MQWIFMLVGL ILGGFAGESL VGALLGGLSG LALGQAVSLQ NLAQQNERLR KQMSEFAERF
       61 ERGTEVIHQR LLRVERQAQD LPESVPEPAA GIDQPLADTP PAPPAEVAPP LDWDIELPAV
      121 EAAPPPPRPP EPVQPIERQP AFQPDAQPAP RRAAPPASPR EPSLVERGFA AAKGWLFGGN
      181 TVLRIGVVLL FIGLAFLLRY ASERVAVPVE YRYAGVALAA MALLGVGWWL RERRAAYGLI
      241 LQGTGIAVLY LTIFAAMRLH PLISPGAALA LLVVVTICSA ILAVLQNAMG LAVVAALGGF
      301 AAPILTSTGS GNHVALFSYF ALLNAGIFAI AWFRAWRPLN LVGFVGTFGI GFAWGLRSYT
      361 PELFASTEPF LALFFLMYVG IGLLFARRKL LEAAQAPAER GELLCWSARQ ADYIDATVLF
      421 GPPLVGFGLQ CAVIGHIDFG MAFSALALGL FYMVLARVLR GHASAGRTSL LVEICLALGV
      481 VFGTLAIPLG LDARWTSAAW AVEGAGIYWL GLHQQRRLAR LFALLLQGGA ALAYLNGVRP
      541 GETTLLEGSP LGALMLGAAA LFSFWQLRRA PAKALADWEP ACRPLLAAAG LAFLYLVAPL
      601 CLAVDSTAIA WAVAGLASLF AGLRLGSRTF LFCAFAVQLL GGALFLLHLQ GGDGQGGVFD
      661 SGWRGLMTAS LIGLALIGGM LLAARDPLVK DDSRLLMGLS LVLLAGLAFV NLAVLFVLPW
      721 RNASAVWAGS GLLIIWLSLV LRQRLSFYFG LALQVVGGLA FLLAGPSLFG SLSGEGLRPL
      781 AHSGFWTPAV LALAALVGAW RLRRAGERER ALGIGTLGLA ELSHLLLLWG AGWWALTALC
      841 ETVRFVPYGL REHALLLVAA ATVASWMLLA LRERWRELAL LCLALVPVAL LALASAWRFD
      901 YQPFGEFGWL AWPLLFATHL LSLRRLAPLL PAKALSVAHV LGCWLLLGVL ALELRYLFAL
      961 LAEQYNAWRW LGWALVPSAY LLLVAGGRSL PWPLRDFPRE YRLLAAAPVA LLLLGWFWSA
     1021 NLLSDGAAEP LPYLPLANPL ELGLLIVLFA LYRWSDASLA SLVDGNASAR LGRQALAGAS
     1081 LFALLTLAVC RAAHHLAGVP FQAEALTASM LVQAGLSLVW TLCALGLTIA GTRLGRRDLW
     1141 MVGAALVGVV VVKLFFVELG NSGSLERIIS FIGVGVLLLV VGYFSPLPPR RAEVASEAEQ
     1201 P
//