LOCUS ANI08168.1 509 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 multidrug resistance protein
B protein.
ACCESSION CP015877-1361
PROTEIN_ID ANI08168.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /gene="emrB"
/locus_tag="A214_06895"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_008032779.1"
/note="multidrug MFS transporte; with EmrA is involved in
resistance to hydrophobic antibiotics such as nalidixic
acid; Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSESSSFSPP SLVMATIGLS LATFMQVLDT TIANVALPTI SGNLGVSSEQ GTWVITSFAV
61 SNAIALPLTG WLARRVGEVR LFIAAALLFV LASFLCGIAQ SMPSLVGFRA LQGFVAGPLY
121 PITQTLLISI YPPAKRGMAL ALLAMVTVVA PIAGPILGGW ITDDYSWPWI FFINVPVGLF
181 AAFVVYQQLK ARPVVIKKAP MDYVGLTALV IGVGALQIVL DKGNDLDWFE SNFIVGGALI
241 AAIALAFFII WEFTDRHPIV NLRLFAHRNF AAGTLALVLG YAAFFGINLL LPQWLQTQMG
301 YTATWAGLAA APIGILPVFL SPLVGRYANH FDLRMLAGLS FLAMAITCFM RANFTTEVDY
361 QHIAIVQLIM GLGVAFFFMP ILSILLSDLP PDQIADGSGL ATFLRTLGGS FAASLTTWIW
421 NRRATQHHAY LSENISLYDP ATHETLAQLG GNTQANAALL DRMVQSQAYM MSTIDYFTML
481 GWLFLALLVI IWLARPPFGA KPGAAASGH
//