LOCUS ANI08147.1 773 aa PRT BCT 02-JUN-2016 DEFINITION Pseudomonas aeruginosa SJTD-1 CbbBc protein protein. ACCESSION CP015877-1340 PROTEIN_ID ANI08147.1 SOURCE Pseudomonas aeruginosa SJTD-1 ORGANISM Pseudomonas aeruginosa SJTD-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6243825) AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J. TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a bacterium capable of degrading long-chain alkanes and crude oil JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012) PUBMED 22887679 REFERENCE 2 (bases 1 to 6243825) AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J. TITLE Direct Submission JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240, China REFERENCE 3 (bases 1 to 6243825) AUTHORS Liang,R. TITLE Direct Submission JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240, China COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Source bacteria available from Dr. Rubing Liang (School of Life Science and Biotechnology, Shanghai Jiaotong University, Shanghai, 200240, China). ##Genome-Assembly-Data-START## Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015 Reference-guided Assembly :: NC_002516.2 Genome Coverage :: 200x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2016 16:12:59 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,696 CDS (total) :: 5,617 Genes (coding) :: 5,603 CDS (coding) :: 5,603 Genes (RNA) :: 79 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 4 Pseudo Genes (total) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 7 of 14 Pseudo Genes (internal stop) :: 3 of 14 Pseudo Genes (multiple problems) :: 1 of 14 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Pseudomonas aeruginosa SJTD-1" /mol_type="genomic DNA" /strain="SJTD-1" /isolation_source="soil" /db_xref="taxon:1193501" /country="China: Shanghai" protein /locus_tag="A214_06785" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_016495256.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSLQPLQPRY KPYAGAAAGW GALRSVAHFW LDSKQPFKNL RALLKTNQNG GFDCPGCAWG 61 DSPEDGRVKF CENGAKAVNW EATKRRVDAA FFARYSVSAL REQSDYWLEY QGRLTGPMRY 121 DPLSDHYQPI TWDAAFALVA EHLRRLDSPD QAEFYTSGRA SNEAAYLYQL FVRAFGTNNF 181 PDCSNMCHEA SGVALGRSVG VGKGSVTFDD FEHADAIFIL GQNPGTNHPR MLEPLREAVK 241 RGAQVVCFNP LKERGLERFQ HPQNALEMLT NGSSPLNTAF FRPALGGDMA AIRGIAKFLL 301 AWEREAQAEG SEPVFDHAFI AEHTDGLEAY LAELDATPWE HLERQSGLSL AEIEQAARMY 361 RRANRVIVCW AMGITQHHHS VAIIQEIVNL QLLRGNLGRP GAGLCPVRGH SNVQGDRTMG 421 INERPPAALL DALERRFGFE VPRHNGHNAV EAIAAMLAGK SKVFIGLGGN FAQATPDSPR 481 THAALASCDL TVHISTKLNR SHLTTGRDAL ILPCLGRTDI DRQAEGPQAV TVEDSFSMIH 541 ASYGQLEPLS QQMRSEPAII AGIAKATLGN HPVDWDALIA NYERIRELIA DTIPGFADFN 601 RRVRHPGGFY LGNSAGERRW NTASGKANFV ANPLPRDLLP AQVRDSGLEP DLILQTLRSH 661 DQYNTTIYGL DDRYRGVKGQ REVVFANEAD IRRLGYQPGD KVDLVSLWSD GIERRVRRFT 721 LLAFDIPAGQ AAAYYPETNP LVPLESVGVG SHTPTSKFIA VRLEKATGDG RII //