LOCUS ANI07163.1 611 aa PRT BCT 02-JUN-2016
DEFINITION Pseudomonas aeruginosa SJTD-1 phage tail tape measure
protein protein.
ACCESSION CP015877-318
PROTEIN_ID ANI07163.1
SOURCE Pseudomonas aeruginosa SJTD-1
ORGANISM Pseudomonas aeruginosa SJTD-1
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6243825)
AUTHORS Liu,H., Liang,R., Tao,F., Ma,C., Liu,Y., Liu,X. and Liu,J.
TITLE Genome sequence of Pseudomonas aeruginosa strain SJTD-1, a
bacterium capable of degrading long-chain alkanes and crude oil
JOURNAL J. Bacteriol. 194 (17), 4783-4784 (2012)
PUBMED 22887679
REFERENCE 2 (bases 1 to 6243825)
AUTHORS Liang,R., Tao,F., Liu,H. and Liu,J.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2012) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiao Tong University, 800 Dongchuan Rd., Shanghai, Shanghai 200240,
China
REFERENCE 3 (bases 1 to 6243825)
AUTHORS Liang,R.
TITLE Direct Submission
JOURNAL Submitted (23-MAY-2016) State Key Laboratory of Microbial
Metabolism, School of Life Sciences and Biotechnology, Shanghai
Jiaotong University, 800 Dongchuan Road, Shanghai, Shanghai 200240,
China
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Dr. Rubing Liang (School of Life
Science and Biotechnology, Shanghai Jiaotong University, Shanghai,
200240, China).
##Genome-Assembly-Data-START##
Assembly Method :: ALLPATH-LG v. 2015; GapCloser v. 2015
Reference-guided Assembly :: NC_002516.2
Genome Coverage :: 200x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/25/2016 16:12:59
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.2
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,696
CDS (total) :: 5,617
Genes (coding) :: 5,603
CDS (coding) :: 5,603
Genes (RNA) :: 79
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 4
Pseudo Genes (total) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 7 of 14
Pseudo Genes (internal stop) :: 3 of 14
Pseudo Genes (multiple problems) :: 1 of 14
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Pseudomonas aeruginosa SJTD-1"
/mol_type="genomic DNA"
/strain="SJTD-1"
/isolation_source="soil"
/db_xref="taxon:1193501"
/country="China: Shanghai"
protein /locus_tag="A214_01635"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003113187.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MATNTDGSLT LDLVLRSEGY RAGMDKVGRI NDQKMRAMEA RAEKAGKAIG KSLDSSALIA
61 SSVLDQALDM LGRTSRQAGQ AKKPVQSAQD KVLAEWKTRQ KELGEAWKSY REPLQDLSKL
121 NEALLKNSSD KLDKALLNLS ETGKLSLANV GKAAYADAAR LASRQMTLML LDGLFGWVAS
181 VGTEKTKVDD KAGKGQAKAG DDEKEQPSLQ SQVFKQWLLQ MNSVWGAYRA PLQDISGMTD
241 ELFRNASEKL EKSLFNFATT GKLSLSNFAK TVIDDVARIA ARQLSMLALD GLFGWMNGKA
301 GITEAQLASQ KPYTSLLEKA RAAAGQAVAG APAAQGAAPM PAAAMDVGAM VATASGQTGD
361 GSKVSAGGAS AAGKPVGSWV EQMDASWASL RDQAQDVSGM MDMLFTNAFT NMENALFTFA
421 TTGKLSFKDF ADSVIQDMAR IAARQATLQI IGGIVGAVSG FFGSGATAGS RISDYTGSDM
481 ANWVSKQRAG GMPGFARGGA FNDGIQSAPA LFSMAGGRPA LIGERGPEAI MPLSRGSDGV
541 LGVRALGGGE GGNVFNFSTS VSLGGGREGA ATASGDDGTG QQLAGMINDA ARNVVAQELR
601 PGGLVWRMVN G
//