LOCUS AMU92859.1 515 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis macrogoltabida integrase protein. ACCESSION CP013345-369 PROTEIN_ID AMU92859.1 SOURCE Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus) ORGANISM Sphingopyxis macrogoltabida Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 421025) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284142 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 421025) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 3.0 Genome Coverage :: 60x Sequencing Technology :: Illumina MiSeq and PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:58:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 5,691 CDS :: 5,518 Pseudo Genes :: 111 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis macrogoltabida" /mol_type="genomic DNA" /strain="203N" /isolation_source="activated sludge" /culture_collection="NBRC:111659" /db_xref="taxon:33050" /plasmid="unnamed1" /country="Japan: Kyoto" /collection_date="1974" protein /locus_tag="ATM17_31890" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_016510927.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRSRSSLPFR AAPLRVEDPP SHGTLLTTFL SSQSLDEKSG CAVLYGAAVR HFLHWLGLHR 61 IAIRTIDDRA VRRFEKHGCR CHRYSAQQAH YKADQAARVR RFVRFLEDQG YVEVDDGIDD 121 LPRHLADYSD AIDRLQLAEG PAQAYRSEAE HFVAWLRMAR RQWIDIDDTI IDHYAAHDCR 181 CPVWRKRGKL VATGTKRRRR CARHFVEFLR GRGAIPLVEP VADDDPHMSA YLAWLKQHRG 241 ATDETIRRYR TDIRRLMPML GEPSQWDAAG LRSAFQRRSK ETPGSASLLV TIMRSYIRFL 301 VVRGECRPAL LHAVPSVQRY RLSTLPRHVD PATIERIIAA CPTDRPVEVR DKAIILLLAR 361 LGLRAADIQN MRLDDIDWRS GHLTVKGKTR RPDRLPLPQD VGDAILAYLA AARPKAAEEH 421 LFLRAQAPFR PFRSSAEIAG IVARTRDRGG IEGVPTGSHI FRHSLATNLL RAGAGLESVG 481 TILRHSSPET TAIYAKVDLP MLMKIAQPWP GEQSC //