LOCUS AMU92856.1 330 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis macrogoltabida integrase protein. ACCESSION CP013345-366 PROTEIN_ID AMU92856.1 SOURCE Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus) ORGANISM Sphingopyxis macrogoltabida Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 421025) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284142 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 421025) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 3.0 Genome Coverage :: 60x Sequencing Technology :: Illumina MiSeq and PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:58:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 5,691 CDS :: 5,518 Pseudo Genes :: 111 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis macrogoltabida" /mol_type="genomic DNA" /strain="203N" /isolation_source="activated sludge" /culture_collection="NBRC:111659" /db_xref="taxon:33050" /plasmid="unnamed1" /country="Japan: Kyoto" /collection_date="1974" protein /locus_tag="ATM17_31875" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_011930443.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSVATLPALI QRFFTDRLCT QLEASRHTVA GYRDTFRLLL RYASAQRGKP PVKLTVEDID 61 ADLVADFLSH IETARGNGAR SRNTRLAAIR SFFRFVAMTD PTWLLHCQRI LTMPNKRYVK 121 RAVTFLDADE IAALLAAPDR TTWTGRRDHA LLLLAVQTGL RASELVGLTR GDVALGTGAH 181 VRCMGKGRKE RATPLRRETA KLLATWIGND KDESRPLFPS IRGERLSRDA LEHLVRKHCL 241 TASRACPSLD TKRVTPHTLR HSTAMELLHH GVDQTVIALW LGHENVETTQ IYIHADMRMK 301 EKALARVAAP ATPPGRFRPD DNLLVFLEGL //