LOCUS       AMU92792.1               764 aa    PRT              BCT 21-JUN-2016
DEFINITION  Sphingopyxis macrogoltabida conjugal transfer protein TraD protein.
ACCESSION   CP013345-301
PROTEIN_ID  AMU92792.1
SOURCE      Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus)
  ORGANISM  Sphingopyxis macrogoltabida
            Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
            Sphingomonadaceae; Sphingopyxis.
REFERENCE   1  (bases 1 to 421025)
  AUTHORS   Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K.,
            Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F.
  TITLE     Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N
            (NBRC 111659), a Polyethylene Glycol Degrader
  JOURNAL   Genome Announc 4 (3) (2016)
   PUBMED   27284142
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 421025)
  AUTHORS   Yoshiyuki,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-NOV-2015) Department of Life Sciences, Tohoku
            University, Katahira 2-1-1, Sendai 980-8577, Japan
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Annotation was conducted using PGAP and MiGAP, and PGAP annotation
            was curated by referencing to the MiGAP annotation with the aid of
            annotation support tool of GenomeMatcher software.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: newbler v. 3.0
            Genome Coverage       :: 60x
            Sequencing Technology :: Illumina MiSeq and PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 11/30/2015 14:58:19
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 3.0
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 5,691
            CDS                          :: 5,518
            Pseudo Genes                 :: 111
            rRNAs                        :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs               :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                        :: 58
            ncRNAs                       :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Sphingopyxis macrogoltabida"
                     /mol_type="genomic DNA"
                     /strain="203N"
                     /isolation_source="activated sludge"
                     /culture_collection="NBRC:111659"
                     /db_xref="taxon:33050"
                     /plasmid="unnamed1"
                     /country="Japan: Kyoto"
                     /collection_date="1974"
     protein         /locus_tag="ATM17_31530"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_011950430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MAHEDIRSDG RPIPLTHHSA RGNVQRNAGN FTRGSQLLTH EVLMWISGAR LPFILWFVLF
       61 FAAWFSIMSI KLDEHGFQLV CMKIYSAFWG WVDLDPAKRV NVTLPTGEIE RTIMRAVPYI
      121 PEVIKAWDTA MRGLLGAFFI SVFIAIPVAI WFVDLSHRRG RSILQERHER GAMLVDRALL
      181 RAEILEHNQA RYEEDVHALC PGHSPSAVLA MPFRARKEAG IHHPYLLAGI PFPHRTEQSH
      241 VMLIGTTGSG KTTELRSLVA QMRVRQDTAV IFDLTGAYVE AFYDSVRDTI LNPMDARCPS
      301 WSIFNDCQTH SEFTAAAAAL IPSDGGSSEP FWALAARTLF VEMCIRLQER GQTTNLALSE
      361 NLMTADLKRV HRFLANTIAD PLTAPEAARM AESIRAVMNT NAQVLRFLPD EGEPFSIRDW
      421 ITRDKKPGSI LFVTSNYVDL PMNRALLTLW MDLAINRLMT LPRTRSLRTW FMFDELGALH
      481 RLPAIENGLQ TGRAFGGAMV LGIHSFEKLV EVYGEQGARN LASLARTKLI LATADLDTAE
      541 QCARYIGNRE VRQMDEAYSY GYNNTRDAST LTPRKQVEPL VIADDITNLP SLHGFVKFPD
      601 GFPAARILLE WKDYPAVAEG HVPRADVSPV RSKRADQAFT EEEDGEPGGR DGGAQVSEGD
      661 TETRNIARDL AARILSAEAE PVDEAVPREA PSTDAQEGAS LPASEAPARY EGKPVAEVEA
      721 VTSTRDHSAS GQAAAPPVQE DLTLFELRQS FGSGLEDDDL DIGI
//