LOCUS AMU92792.1 764 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis macrogoltabida conjugal transfer protein TraD protein. ACCESSION CP013345-301 PROTEIN_ID AMU92792.1 SOURCE Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus) ORGANISM Sphingopyxis macrogoltabida Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 421025) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284142 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 421025) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 3.0 Genome Coverage :: 60x Sequencing Technology :: Illumina MiSeq and PacBio ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:58:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 5,691 CDS :: 5,518 Pseudo Genes :: 111 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis macrogoltabida" /mol_type="genomic DNA" /strain="203N" /isolation_source="activated sludge" /culture_collection="NBRC:111659" /db_xref="taxon:33050" /plasmid="unnamed1" /country="Japan: Kyoto" /collection_date="1974" protein /locus_tag="ATM17_31530" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_011950430.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MAHEDIRSDG RPIPLTHHSA RGNVQRNAGN FTRGSQLLTH EVLMWISGAR LPFILWFVLF 61 FAAWFSIMSI KLDEHGFQLV CMKIYSAFWG WVDLDPAKRV NVTLPTGEIE RTIMRAVPYI 121 PEVIKAWDTA MRGLLGAFFI SVFIAIPVAI WFVDLSHRRG RSILQERHER GAMLVDRALL 181 RAEILEHNQA RYEEDVHALC PGHSPSAVLA MPFRARKEAG IHHPYLLAGI PFPHRTEQSH 241 VMLIGTTGSG KTTELRSLVA QMRVRQDTAV IFDLTGAYVE AFYDSVRDTI LNPMDARCPS 301 WSIFNDCQTH SEFTAAAAAL IPSDGGSSEP FWALAARTLF VEMCIRLQER GQTTNLALSE 361 NLMTADLKRV HRFLANTIAD PLTAPEAARM AESIRAVMNT NAQVLRFLPD EGEPFSIRDW 421 ITRDKKPGSI LFVTSNYVDL PMNRALLTLW MDLAINRLMT LPRTRSLRTW FMFDELGALH 481 RLPAIENGLQ TGRAFGGAMV LGIHSFEKLV EVYGEQGARN LASLARTKLI LATADLDTAE 541 QCARYIGNRE VRQMDEAYSY GYNNTRDAST LTPRKQVEPL VIADDITNLP SLHGFVKFPD 601 GFPAARILLE WKDYPAVAEG HVPRADVSPV RSKRADQAFT EEEDGEPGGR DGGAQVSEGD 661 TETRNIARDL AARILSAEAE PVDEAVPREA PSTDAQEGAS LPASEAPARY EGKPVAEVEA 721 VTSTRDHSAS GQAAAPPVQE DLTLFELRQS FGSGLEDDDL DIGI //